Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0535
(613 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995... 131 4e-31
09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433... 125 3e-29
06_01_0776 - 5805555-5805639,5805769-5806008,5806103-5806173,580... 29 2.2
11_03_0158 + 10911997-10912078,10912203-10912288,10913780-109138... 29 2.9
01_06_0836 - 32321431-32321556,32321656-32321872,32321975-323235... 29 2.9
01_05_0329 - 21037980-21038378,21038517-21038737,21038827-210389... 29 2.9
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196... 29 2.9
03_01_0218 - 1717246-1717892,1717995-1718163,1718262-1720022,172... 29 3.8
09_06_0169 - 21303270-21303731,21304863-21304996,21305384-21305630 28 6.7
05_05_0385 + 24566916-24567503,24568609-24568824,24568916-245692... 28 6.7
03_05_0626 + 26233178-26233233,26234083-26234284,26234800-262349... 28 6.7
07_03_1649 - 28385289-28385358,28387039-28387877 27 8.9
05_04_0360 - 20617865-20619799 27 8.9
04_04_1359 - 32886181-32886789 27 8.9
>08_02_1361 -
26398987-26399019,26399320-26399387,26399458-26399560,
26399658-26399888,26400791-26400826,26400891-26400931,
26401028-26401064,26401158-26401160
Length = 183
Score = 131 bits (317), Expect = 4e-31
Identities = 60/90 (66%), Positives = 71/90 (78%)
Frame = +1
Query: 256 GRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYM 435
GRWP KSA F+L LL+NAESNAD K LDVD L + HIQVN+A RRRTYRAHGRINPYM
Sbjct: 94 GRWPAKSARFILDLLKNAESNADVKGLDVDNLFVSHIQVNQAQKQRRRTYRAHGRINPYM 153
Query: 436 SSPCHIEVCLSEREDAVARVAPTDVPQRRK 525
SSPCH+E+ LSE+E+AV + T + RR+
Sbjct: 154 SSPCHVELILSEKEEAVKKEPETTIAPRRQ 183
Score = 91.1 bits (216), Expect = 6e-19
Identities = 49/86 (56%), Positives = 57/86 (66%), Gaps = 12/86 (13%)
Frame = +2
Query: 17 MGRYSREPDNPAKSCKARGSNLRVHFK------------NTYETAMANRKMPLRRAVRYL 160
MG+YS EP NP KS KA G +LRVHFK NT ETA A RK+PL +A RYL
Sbjct: 1 MGKYSTEPSNPTKSAKAMGRDLRVHFKVIVFARFVQCCSNTRETAFALRKLPLVKAKRYL 60
Query: 161 KNVIEKKECIPFRRFNGGVGRCAQAK 238
++VI K+ IPFRR+ GGVGR AQ K
Sbjct: 61 EDVIAHKQAIPFRRYCGGVGRTAQVK 86
>09_02_0105 -
4337047-4337079,4337175-4337242,4337323-4337425,
4337507-4337737,4339307-4339347,4339437-4339473,
4339603-4339605
Length = 171
Score = 125 bits (301), Expect = 3e-29
Identities = 57/89 (64%), Positives = 69/89 (77%)
Frame = +1
Query: 256 GRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYM 435
GRWP KSA F+L LL+NAESNA+ K LDVD L + HIQVN+A RRRTYRAHGRINPYM
Sbjct: 82 GRWPAKSARFILDLLKNAESNAEVKGLDVDTLYVSHIQVNQAQKQRRRTYRAHGRINPYM 141
Query: 436 SSPCHIEVCLSEREDAVARVAPTDVPQRR 522
SSPCHIE+ LSE+E+ V + + + R+
Sbjct: 142 SSPCHIELILSEKEEPVKKEPESQIAARK 170
Score = 101 bits (243), Expect = 3e-22
Identities = 49/74 (66%), Positives = 58/74 (78%)
Frame = +2
Query: 17 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMANRKMPLRRAVRYLKNVIEKKECIPF 196
M +YSRE +NP KS KA G +LRVHFKNT ETA A RK+PL +A RYL++VI K+ IPF
Sbjct: 1 MVKYSREANNPTKSSKAMGRDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPF 60
Query: 197 RRFNGGVGRCAQAK 238
RR+ GGVGR AQAK
Sbjct: 61 RRYCGGVGRTAQAK 74
>06_01_0776 -
5805555-5805639,5805769-5806008,5806103-5806173,
5806274-5806627
Length = 249
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 500 LLMCPSEEKAFQEKACASKGEDDE 571
LL C EE+A EK C GED +
Sbjct: 105 LLGCSGEEEAMAEKVCTQAGEDHD 128
>11_03_0158 +
10911997-10912078,10912203-10912288,10913780-10913857,
10913967-10914098,10914385-10914435,10914529-10914669,
10914754-10914876,10914989-10915066,10915448-10915541,
10915633-10915739,10915936-10916019,10916649-10916744,
10916835-10917023,10917705-10917780,10918507-10918610,
10918708-10918967,10920000-10920086,10920184-10920411,
10920752-10920826,10921264-10921346,10921552-10921661
Length = 787
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/65 (21%), Positives = 28/65 (43%)
Frame = +2
Query: 14 IMGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMANRKMPLRRAVRYLKNVIEKKECIP 193
++ + + + K C RGS +R+H KN + P RR + +++ + I
Sbjct: 530 VLAKMAERDEGTLKDCAQRGSFVRLHLKNVPTEIASKLVHPSRRLPVVVSGLLQHESKIS 589
Query: 194 FRRFN 208
F+
Sbjct: 590 VLHFS 594
>01_06_0836 -
32321431-32321556,32321656-32321872,32321975-32323590,
32323670-32323753,32323834-32324104,32324294-32324547,
32324709-32324918,32325839-32326024
Length = 987
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +2
Query: 95 KNTYETAMANRKMPLRRAVRYLKNVIEKKEC 187
K+ +E+ MAN++M A+ +N + ++EC
Sbjct: 353 KHDFESEMANKQMSFDAAMEVTRNALHQREC 383
>01_05_0329 -
21037980-21038378,21038517-21038737,21038827-21038905,
21039002-21039071,21039144-21039255,21039359-21039398,
21039482-21039676,21039925-21040044,21040684-21041106,
21042386-21042928
Length = 733
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +2
Query: 440 LPATSKYVSANAKMLSLG*PLLMCPSEEKAFQEK-ACASKGEDDEGIDIR 586
LPA + + + A L +G P EE F+EK C S+ E+D G D+R
Sbjct: 578 LPAPNSHPTTFASSLLMG-PCEKIEDEENVFEEKLRCLSELEED-GFDVR 625
>01_05_0279 + 20318440-20318688,20318785-20318931,20319449-20319611,
20319770-20319887,20320607-20320676,20320774-20320854,
20320924-20320959,20321129-20321149,20321586-20321642,
20321716-20321827,20321905-20322178,20322454-20322556,
20323244-20323459,20324615-20324665,20325339-20327963
Length = 1440
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +1
Query: 268 KKSAEFLLQLLRNAE--SNADNKTLDVDRLVIDHIQVNRAPCLR 393
K EF Q+ + +E S + + L + + I H+ + APCLR
Sbjct: 1033 KSKEEFFCQVYKGSEACSIENTRRLSIQNVSIQHLSGSSAPCLR 1076
>03_01_0218 -
1717246-1717892,1717995-1718163,1718262-1720022,
1720531-1720610,1720854-1720981,1721004-1721012,
1723701-1723742,1725891-1726002,1726358-1726514,
1726678-1726762,1727628-1727713,1727998-1728042
Length = 1106
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +1
Query: 133 AAPSCCSL---PQKRD*KERV-YSIPSLQRRRWSLCSSKAVWHNTGRWP 267
AAPS C L P R+ ERV + + +L R L SSK + RWP
Sbjct: 3 AAPSRCLLVTGPPVRESGERVGFEVVTLDGRTGPLASSKVSSRESVRWP 51
>09_06_0169 - 21303270-21303731,21304863-21304996,21305384-21305630
Length = 280
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 319 RLIQRSSITARGIRRISWASDPCCA 245
R +Q+ ++ARG R S A+D CC+
Sbjct: 12 RKLQQKMVSARGGRHTSSATDDCCS 36
>05_05_0385 +
24566916-24567503,24568609-24568824,24568916-24569241,
24569906-24570338,24570769-24571281
Length = 691
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = -1
Query: 328 CCQRLIQRSSITARGIRRISWASDPCCAKLLCLSTATNAAVEATEWNTLFLFN 170
C L +++ + G R++W + A+ +CLS+ N A +W + + N
Sbjct: 307 CVDPLYYGAAVASVGGDRLAWGGN-ATARNVCLSSGDNYQYGAYKWTVMLVSN 358
>03_05_0626 +
26233178-26233233,26234083-26234284,26234800-26234968,
26235767-26238768
Length = 1142
Score = 27.9 bits (59), Expect = 6.7
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Frame = +1
Query: 112 RNGKQKDAAPSCCSLPQKRD*KERVYSIPSLQRRRWSLCSSKAVWHNTGRWPKKSAE-FL 288
+N + D A S SLP KR KE+ L+ W S A H+ R S E L
Sbjct: 291 KNLEGSDEAESKKSLPGKRVRKEKNDLASELKDLGW----SDADLHDETRTTAMSVEGEL 346
Query: 289 LQLLRNA--ESNADNKTLDVDRLVIDHIQVNRAPCLRR 396
Q+LR +S+ NKT +D+ ++ ++ +A L+R
Sbjct: 347 SQILREVTPKSSEGNKTSSIDKSQVNALK-RQALLLKR 383
>07_03_1649 - 28385289-28385358,28387039-28387877
Length = 302
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +1
Query: 409 AHGRINPYMSSPCHIEVCLSEREDAVARVAPTDV 510
AHG INPY+ + S + D V + T V
Sbjct: 18 AHGHINPYLELATRLTTTSSSQIDVVVHLVSTPV 51
>05_04_0360 - 20617865-20619799
Length = 644
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 245 GTTRVAGPRNPPNSSCS 295
G + VAGP NPP ++C+
Sbjct: 213 GISNVAGPTNPPTAACT 229
>04_04_1359 - 32886181-32886789
Length = 202
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/53 (28%), Positives = 30/53 (56%)
Frame = +2
Query: 401 HTVLTVASTPTCRLPATSKYVSANAKMLSLG*PLLMCPSEEKAFQEKACASKG 559
+ + + +S+ + LP++S +S + S +++ EE+ +EKA ASKG
Sbjct: 113 YVMASSSSSSSSSLPSSSSSLSPSPPASSSSCGVVVITKEEEEREEKAIASKG 165
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,860,361
Number of Sequences: 37544
Number of extensions: 354340
Number of successful extensions: 1061
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -