Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0535
         (613 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48345| Best HMM Match : Ribosomal_L22 (HMM E-Value=0)              110   8e-25
SB_45420| Best HMM Match : TSP_1 (HMM E-Value=0.0024)                  29   3.0  
SB_59437| Best HMM Match : AAA (HMM E-Value=7.4e-08)                   27   9.1  
SB_54002| Best HMM Match : POP1 (HMM E-Value=0)                        27   9.1  
SB_9085| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.1  

>SB_48345| Best HMM Match : Ribosomal_L22 (HMM E-Value=0)
          Length = 142

 Score =  110 bits (265), Expect = 8e-25
 Identities = 49/74 (66%), Positives = 62/74 (83%)
 Frame = +2

Query: 17  MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMANRKMPLRRAVRYLKNVIEKKECIPF 196
           M RY+ +P+NP KSCKARGSNLRVH+KNT+E AMA + M +R+A RYLK+V  KK+ +PF
Sbjct: 1   MTRYATDPENPTKSCKARGSNLRVHYKNTHEAAMAIKGMHVRKANRYLKDVCAKKQLVPF 60

Query: 197 RRFNGGVGRCAQAK 238
           R++NGGVGR AQAK
Sbjct: 61  RKYNGGVGRKAQAK 74



 Score =  101 bits (242), Expect = 5e-22
 Identities = 46/57 (80%), Positives = 51/57 (89%)
 Frame = +1

Query: 256 GRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRIN 426
           GRWPKKSAE LLQLL+NAESNA+ K LDVD LV++HIQVN AP +RRRTYRAHGRIN
Sbjct: 83  GRWPKKSAEILLQLLKNAESNAEFKGLDVDSLVVEHIQVNEAPSMRRRTYRAHGRIN 139


>SB_45420| Best HMM Match : TSP_1 (HMM E-Value=0.0024)
          Length = 426

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 217 WSLCSSKAVWHNTGRWPKKSAEFLLQLLRN 306
           W  C ++ VW   G W + SAE +   LR+
Sbjct: 140 WPTCHARIVWSKWGEWGECSAEGIKSRLRH 169


>SB_59437| Best HMM Match : AAA (HMM E-Value=7.4e-08)
          Length = 568

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 430 YMSSPCHIEVCLSER-EDAVARVAPTDVPQRR 522
           +M + CH E C+  R +D+ AR  P D P+R+
Sbjct: 437 FMLAGCHDEYCIQRRYQDSAARDGP-DYPRRQ 467


>SB_54002| Best HMM Match : POP1 (HMM E-Value=0)
          Length = 886

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +1

Query: 154 LPQKRD*KERVYSIPSLQR--RRWSL-CSSKAVWHNTGRWPKKSAEFLLQLLRNAESN 318
           L Q+++ +ER  S+PS+     RW    +  ++WH   R   K ++   Q L    SN
Sbjct: 473 LVQEKNNEERNASLPSMPAAVNRWPTGAAGSSIWHRDARQQCKESKISEQKLNAMRSN 530


>SB_9085| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 710

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/49 (22%), Positives = 24/49 (48%)
 Frame = +2

Query: 86  VHFKNTYETAMANRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQ 232
           + F+N + + + N+K+       YL  ++E K+ +P    N   G+  +
Sbjct: 86  IRFENMFISQVDNKKISAEEKFGYLLELVEHKQSMPVFEMNSVDGKARE 134


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,427,099
Number of Sequences: 59808
Number of extensions: 408343
Number of successful extensions: 1164
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)