Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0535
         (613 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...   139   1e-33
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...   116   1e-26
U41028-4|AAA82357.1|  455|Caenorhabditis elegans Hypothetical pr...    31   0.65 
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z81041-7|CAE17709.1|   95|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z75530-8|CAA99792.2|  405|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AL117207-2|CAB60390.1|  164|Caenorhabditis elegans Hypothetical ...    28   6.0  

>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score =  139 bits (337), Expect = 1e-33
 Identities = 67/103 (65%), Positives = 78/103 (75%), Gaps = 1/103 (0%)
 Frame = +1

Query: 244 WHNT-GRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGR 420
           W+ T GRWP KSA+FLL LL+NAESNA+ K LDVD LVI+HI V RA  LRRRTYRAHGR
Sbjct: 78  WNTTQGRWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGR 137

Query: 421 INPYMSSPCHIEVCLSEREDAVARVAPTDVPQRRKSFPRKSLR 549
           INPYMSSPCHIEV L+E+ED V++      P+ +K   RK  R
Sbjct: 138 INPYMSSPCHIEVILAEKEDVVSKPTDDAAPKVKKESKRKQRR 180



 Score =  114 bits (275), Expect = 4e-26
 Identities = 53/81 (65%), Positives = 63/81 (77%)
 Frame = +2

Query: 26  YSREPDNPAKSCKARGSNLRVHFKNTYETAMANRKMPLRRAVRYLKNVIEKKECIPFRRF 205
           YSR P+N  KSCKARGS+LRVHFKNT+E AMA R MPLRRA  +L +V E KE +PFRRF
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65

Query: 206 NGGVGRCAQAKQFGTTRVAGP 268
           +GG+GR AQ KQ+ TT+   P
Sbjct: 66  HGGIGRAAQTKQWNTTQGRWP 86


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score =  116 bits (279), Expect = 1e-26
 Identities = 56/87 (64%), Positives = 65/87 (74%)
 Frame = +1

Query: 289 LQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLS 468
           L LL+NAESNA+ K LDVD LVI+HI V RA  LRRRTYRAHGRINPYMSSPCHIEV L+
Sbjct: 66  LDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMSSPCHIEVILA 125

Query: 469 EREDAVARVAPTDVPQRRKSFPRKSLR 549
           E+ED V++      P+ +K   RK  R
Sbjct: 126 EKEDVVSKPTDDAAPKVKKESKRKQRR 152



 Score = 91.1 bits (216), Expect = 6e-19
 Identities = 42/60 (70%), Positives = 48/60 (80%)
 Frame = +2

Query: 26  YSREPDNPAKSCKARGSNLRVHFKNTYETAMANRKMPLRRAVRYLKNVIEKKECIPFRRF 205
           YSR P+N  KSCKARGS+LRVHFKNT+E AMA R MPLRRA  +L +V E KE +PFRRF
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65


>U41028-4|AAA82357.1|  455|Caenorhabditis elegans Hypothetical
           protein C25G6.5 protein.
          Length = 455

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -1

Query: 211 AVEATEWNTLFLFN--HVFEVTNSTTERHLSVCHCGLICVLKVN 86
           AV A  W  L +F+  + FE+ NS +    S+CHC  +C   +N
Sbjct: 278 AVFAVAWLPLNVFHIFNTFELVNSFSVTTFSICHCLAMCSACLN 321


>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
           protein Y46B2A.2 protein.
          Length = 1365

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
 Frame = +1

Query: 238 AVWHNTGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHI-QVNRAPCLRR-----R 399
           A + +   W K+    +  LL  AE++    + D+D++V   I   +  P L R      
Sbjct: 480 AAYISVFEWQKRGLPHVHMLLTMAENSKPRTSEDIDKIVQAEIPNPDNEPELHRIVTTAM 539

Query: 400 TYRAHGRINPYMSSPCHIEVCLSER 474
            +R +G  NP+  SPC ++   S+R
Sbjct: 540 MHRPYGAQNPH--SPCMVDGHCSKR 562


>Z81041-7|CAE17709.1|   95|Caenorhabditis elegans Hypothetical
           protein C27A7.9 protein.
          Length = 95

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = -1

Query: 451 CGRETTCRG*CDREHGMYVCVGRARDLPECGR*LACQRPKFCC 323
           CG +T  R  C  +    +C G   +L  C   +     K CC
Sbjct: 40  CGNQTRARS-CSSQTASCICTGNTTELQTCNNDVCIFPRKSCC 81


>Z75530-8|CAA99792.2|  405|Caenorhabditis elegans Hypothetical
           protein C47E8.3 protein.
          Length = 405

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -2

Query: 186 HSFFSITFLR*RTARRSGIFLFAI 115
           ++F++I F+R  + RRSG+F F +
Sbjct: 44  NTFYTIVFIRNPSLRRSGLFYFGV 67


>AL117207-2|CAB60390.1|  164|Caenorhabditis elegans Hypothetical
           protein Y60A3A.2 protein.
          Length = 164

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 203 SDGMEYTLSFQSRF*GNEQHDGAASFC 123
           S G  ++ S    F GN +HDGA + C
Sbjct: 5   SPGFSFSTSLVKAFFGNNKHDGAEAAC 31


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,974,725
Number of Sequences: 27780
Number of extensions: 295215
Number of successful extensions: 829
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)