Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0535
(613 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) simi... 125 3e-29
At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) simi... 125 3e-29
At5g49900.1 68418.m06179 expressed protein contains Pfam domain ... 29 1.8
At1g51850.1 68414.m05845 leucine-rich repeat protein kinase, put... 29 3.2
At4g17610.1 68417.m02633 tRNA/rRNA methyltransferase (SpoU) fami... 28 4.2
At4g35300.2 68417.m05018 transporter-related low similarity to h... 28 5.6
At4g35300.1 68417.m05017 transporter-related low similarity to h... 28 5.6
At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 fac... 28 5.6
At1g76890.1 68414.m08947 trihelix DNA-binding protein / GT-2 fac... 28 5.6
At3g46330.1 68416.m05017 leucine-rich repeat protein kinase, put... 27 7.4
At3g15530.2 68416.m01969 expressed protein 27 7.4
At3g15530.1 68416.m01968 expressed protein 27 7.4
At1g19790.1 68414.m02475 lateral root primordium (LRP) protein-r... 27 7.4
At1g07560.1 68414.m00809 leucine-rich repeat protein kinase, put... 27 7.4
At5g33320.1 68418.m03955 triose phosphate/phosphate translocator... 27 9.8
At2g29050.1 68415.m03531 rhomboid family protein contains PFAM d... 27 9.8
At1g51820.1 68414.m05841 leucine-rich repeat protein kinase, put... 27 9.8
>At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) similar
to ribosomal protein GI:19101 from [Hordeum vulgare]
Length = 175
Score = 125 bits (301), Expect = 3e-29
Identities = 58/90 (64%), Positives = 70/90 (77%)
Frame = +1
Query: 256 GRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYM 435
GRWP KSA+F+L LL+NAESNA+ K LDVD L I HIQVN+A RRRTYRAHGRINPYM
Sbjct: 82 GRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYM 141
Query: 436 SSPCHIEVCLSEREDAVARVAPTDVPQRRK 525
S+PCHIE+ LSE+E+ V + T + + K
Sbjct: 142 SNPCHIELILSEKEEPVKKEPETQLAAKSK 171
Score = 105 bits (251), Expect = 3e-23
Identities = 51/74 (68%), Positives = 59/74 (79%)
Frame = +2
Query: 17 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMANRKMPLRRAVRYLKNVIEKKECIPF 196
M +YS+EPDN KSCKARGS+LRVHFKNT ETA A RK+PL +A RYL++VI K+ IPF
Sbjct: 1 MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60
Query: 197 RRFNGGVGRCAQAK 238
RF GVGR AQAK
Sbjct: 61 TRFCRGVGRTAQAK 74
>At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) similar
to GB:P51413 from [Arabidopsis thaliana]; similar to
ESTs gb|L33542 and gb|AA660016
Length = 176
Score = 125 bits (301), Expect = 3e-29
Identities = 58/90 (64%), Positives = 70/90 (77%)
Frame = +1
Query: 256 GRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYM 435
GRWP KSA+F+L LL+NAESNA+ K LDVD L I HIQVN+A RRRTYRAHGRINPYM
Sbjct: 82 GRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYM 141
Query: 436 SSPCHIEVCLSEREDAVARVAPTDVPQRRK 525
S+PCHIE+ LSE+E+ V + T + + K
Sbjct: 142 SNPCHIELILSEKEEPVKKEPETQLAAKSK 171
Score = 104 bits (249), Expect = 5e-23
Identities = 50/74 (67%), Positives = 59/74 (79%)
Frame = +2
Query: 17 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMANRKMPLRRAVRYLKNVIEKKECIPF 196
M +YS+EPDN KSCKARG++LRVHFKNT ETA A RK+PL +A RYL++VI K+ IPF
Sbjct: 1 MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPF 60
Query: 197 RRFNGGVGRCAQAK 238
RF GVGR AQAK
Sbjct: 61 TRFCRGVGRTAQAK 74
>At5g49900.1 68418.m06179 expressed protein contains Pfam domain
PF04685: Protein of unknown function, DUF608
Length = 957
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 247 HNTGRWPKKSAEFLLQLLRNAESNADNK 330
HNT RW + +F+LQ+ R+ + D K
Sbjct: 616 HNTDRWKDLNPKFVLQVYRDVVATGDKK 643
>At1g51850.1 68414.m05845 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376
Length = 865
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -1
Query: 286 GIRRISWASDPCCAKL 239
GI RISW DPC KL
Sbjct: 350 GISRISWQGDPCVPKL 365
>At4g17610.1 68417.m02633 tRNA/rRNA methyltransferase (SpoU) family
protein similar to TAR RNA loop binding protein [Homo
sapiens] GI:1184692; contains Pfam profile PF00588: SpoU
rRNA Methylase (RNA methyltransferase, TrmH) family
Length = 1850
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 546 QAFSWKAFSSLGHISRGYPSDSIFAFAETYFDV 448
Q F W+ F L + R Y D + E++FDV
Sbjct: 95 QLFVWRVFIPLMKMVRAYDLDMLNKIVESFFDV 127
>At4g35300.2 68417.m05018 transporter-related low similarity to
hexose transporter [Solanum tuberosum] GI:8347246;
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 729
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -3
Query: 332 VLLSAFDSAFLNNCKRNSADFLGQRPVLCQTALL 231
V +S + + C AD+LG+RP+L +++L
Sbjct: 49 VAMSLIGATLITTCSGGVADWLGRRPMLILSSIL 82
>At4g35300.1 68417.m05017 transporter-related low similarity to
hexose transporter [Solanum tuberosum] GI:8347246;
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 739
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -3
Query: 332 VLLSAFDSAFLNNCKRNSADFLGQRPVLCQTALL 231
V +S + + C AD+LG+RP+L +++L
Sbjct: 49 VAMSLIGATLITTCSGGVADWLGRRPMLILSSIL 82
>At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 factor
(GT2) identical to GT2 factor [Arabidopsis thaliana]
GI:416490, GI:2664202 (DNA binding factor GT-2 from
Arabidopsis)
Length = 575
Score = 27.9 bits (59), Expect = 5.6
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +1
Query: 229 SSKAVWHNTGRWPKKSAEFLLQLLRNAESN 318
++ +V ++ RWPK E L+++ +N E+N
Sbjct: 387 NNHSVSPSSSRWPKTEVEALIRIRKNLEAN 416
>At1g76890.1 68414.m08947 trihelix DNA-binding protein / GT-2 factor
(GT2) identical to GT2 factor [Arabidopsis thaliana]
GI:416490, GI:2664202 (DNA binding factor GT-2 from
Arabidopsis)
Length = 498
Score = 27.9 bits (59), Expect = 5.6
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +1
Query: 229 SSKAVWHNTGRWPKKSAEFLLQLLRNAESN 318
++ +V ++ RWPK E L+++ +N E+N
Sbjct: 310 NNHSVSPSSSRWPKTEVEALIRIRKNLEAN 339
>At3g46330.1 68416.m05017 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 878
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 295 TARGIRRISWASDPCCAK 242
T G+ RISW DPC K
Sbjct: 377 TTYGLSRISWQGDPCVPK 394
>At3g15530.2 68416.m01969 expressed protein
Length = 288
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
Frame = -1
Query: 598 LLFNPYVYSLI----IFSF*RASFFLESFFFAGA 509
LLF+ + +SL+ + F + FFL+SFF +GA
Sbjct: 28 LLFHAFFFSLLSLLFLIYFDQICFFLDSFFLSGA 61
>At3g15530.1 68416.m01968 expressed protein
Length = 288
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
Frame = -1
Query: 598 LLFNPYVYSLI----IFSF*RASFFLESFFFAGA 509
LLF+ + +SL+ + F + FFL+SFF +GA
Sbjct: 28 LLFHAFFFSLLSLLFLIYFDQICFFLDSFFLSGA 61
>At1g19790.1 68414.m02475 lateral root primordium (LRP)
protein-related similar to lateral root primordium 1
(LRP1) [Arabidopsis thaliana] GI:882341; contains Pfam
profile PF05142: Domain of unknown function (DUF702)
Length = 345
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 59 CKARGSNLRVHFKNTYETAMANRKMPLRRAVRYLKNV 169
CK+RG + + H K+T+ +A R+ + AV K +
Sbjct: 139 CKSRGFDCQTHVKSTWVSAAKRRERQAQLAVLPAKRI 175
>At1g07560.1 68414.m00809 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 856
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 307 RSSITARGIRRISWASDPCCAKLL 236
+S T+ G+ RISW DPC + L
Sbjct: 373 KSIETSYGLSRISWQGDPCVPQQL 396
>At5g33320.1 68418.m03955 triose phosphate/phosphate translocator,
putative similar to SWISS-PROT:P52178 triose
phosphate/phosphate translocator [Cauliflower] {Brassica
oleracea}
Length = 408
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = +1
Query: 184 VYSIPSLQRRRWSLCSS 234
V SIPSL RR W L SS
Sbjct: 43 VVSIPSLSRRSWRLASS 59
>At2g29050.1 68415.m03531 rhomboid family protein contains PFAM
domain PF01694, Rhomboid family
Length = 389
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 362 WSITSLSTSKVLLSAFDSAFLNNCKRNSA 276
W + ++ + + L A S F+NNC +NSA
Sbjct: 57 WLVPAIVVANIALFAI-SMFINNCPKNSA 84
>At1g51820.1 68414.m05841 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase GI:1321686 from (Arabidopsis thaliana); contains
leucine rich repeat (LRR) domains, Pfam:PF00560;
contains protein kinase domain, Pfam:PF00069
Length = 885
Score = 27.1 bits (57), Expect = 9.8
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 286 GIRRISWASDPCCAKLL 236
G+ RISW DPC K L
Sbjct: 370 GLSRISWQGDPCVPKQL 386
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,198,375
Number of Sequences: 28952
Number of extensions: 271347
Number of successful extensions: 815
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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