Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0531
(663 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 107 1e-24
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 107 1e-24
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 83 5e-17
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 74 2e-14
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 45 1e-05
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 5.6
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar... 25 7.4
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 25 7.4
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p... 25 7.4
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 25 9.7
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 107 bits (257), Expect = 1e-24
Identities = 50/82 (60%), Positives = 60/82 (73%)
Frame = +2
Query: 11 RRCLYACLLTAQPRLMEPVNLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVK 190
RR +YA L A P + EPV L EIQ E A+GGIY VLN++RGHVF E Q GTP++ +K
Sbjct: 710 RRVVYASTLLASPIIQEPVFLVEIQVSENAMGGIYSVLNKKRGHVFSEEQRVGTPLYNIK 769
Query: 191 AYLPVNESFGFTADLRSNTGGR 256
AYLPVNESFGFT +LR T G+
Sbjct: 770 AYLPVNESFGFTGELRQATAGQ 791
Score = 64.9 bits (151), Expect = 1e-11
Identities = 27/42 (64%), Positives = 31/42 (73%)
Frame = +1
Query: 256 AFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLP 381
AFPQ VFDHW + GDP +P SKP +V E RKRKGLKE +P
Sbjct: 792 AFPQLVFDHWSPMSGDPLDPTSKPGQIVCEARKRKGLKENVP 833
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 107 bits (257), Expect = 1e-24
Identities = 50/82 (60%), Positives = 60/82 (73%)
Frame = +2
Query: 11 RRCLYACLLTAQPRLMEPVNLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVK 190
RR +YA L A P + EPV L EIQ E A+GGIY VLN++RGHVF E Q GTP++ +K
Sbjct: 710 RRVVYASTLLASPIIQEPVFLVEIQVSENAMGGIYSVLNKKRGHVFSEEQRVGTPLYNIK 769
Query: 191 AYLPVNESFGFTADLRSNTGGR 256
AYLPVNESFGFT +LR T G+
Sbjct: 770 AYLPVNESFGFTGELRQATAGQ 791
Score = 64.9 bits (151), Expect = 1e-11
Identities = 27/42 (64%), Positives = 31/42 (73%)
Frame = +1
Query: 256 AFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLP 381
AFPQ VFDHW + GDP +P SKP +V E RKRKGLKE +P
Sbjct: 792 AFPQLVFDHWSPMSGDPLDPTSKPGQIVCEARKRKGLKENVP 833
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 82.6 bits (195), Expect = 5e-17
Identities = 38/82 (46%), Positives = 55/82 (67%)
Frame = +2
Query: 11 RRCLYACLLTAQPRLMEPVNLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVK 190
RR Y+ LTA PRLMEPV + E+ P ++ IY +L RRRGHV ++ G+P+++V+
Sbjct: 826 RRVCYSSFLTASPRLMEPVYMVEVHAPADSLPIIYDLLTRRRGHVLQDIPRPGSPLYLVR 885
Query: 191 AYLPVNESFGFTADLRSNTGGR 256
A +PV +S GF DLR +T G+
Sbjct: 886 ALIPVIDSCGFETDLRVHTQGQ 907
Score = 38.7 bits (86), Expect = 7e-04
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = +1
Query: 256 AFPQCVFDHWQVLPGDPCEPQSKP 327
A Q VFDHWQV+PGDP + KP
Sbjct: 908 AMCQMVFDHWQVVPGDPLDKSIKP 931
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1000
Score = 73.7 bits (173), Expect = 2e-14
Identities = 32/69 (46%), Positives = 44/69 (63%)
Frame = +2
Query: 47 PRLMEPVNLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFT 226
PRLM + C++Q +G +YGV+++RRG V +E GTP FIVKA +PV ESFGF
Sbjct: 860 PRLMLAMYSCDVQATSEVLGRVYGVVSKRRGRVIDEEMKEGTPFFIVKALIPVVESFGFA 919
Query: 227 ADLRSNTGG 253
++ T G
Sbjct: 920 VEILKRTSG 928
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 44.8 bits (101), Expect = 1e-05
Identities = 23/84 (27%), Positives = 42/84 (50%)
Frame = +2
Query: 5 ATRRCLYACLLTAQPRLMEPVNLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFI 184
AT L A P ++EP+ I P GG+ G L++R+ + + F
Sbjct: 658 ATISAFRTAFLQANPMVLEPIMNVSITAPVEHQGGVIGNLDKRKATIVDSD--TDEDEFT 715
Query: 185 VKAYLPVNESFGFTADLRSNTGGR 256
++A +P+N F +++D+R+ T G+
Sbjct: 716 LQAEVPLNSMFSYSSDIRALTKGK 739
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 237 VPTPADGLPAVRIRPLAGPPWRPVRTSE 320
VPTP+ GLP V + P A P P +SE
Sbjct: 1219 VPTPSAGLPPVPV-PTAKAPPVPAPSSE 1245
>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 232
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 280 HWQVLPGDPCEPQSKPYNVVQETRKRK 360
H+Q L GDP + PY VQ RK
Sbjct: 78 HFQNLSGDPVSQMATPYPPVQIELMRK 104
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 25.4 bits (53), Expect = 7.4
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +2
Query: 89 PEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKA-YLPVNESFGFTADLRSNTGGRPSR 265
P +A GGI + R+ H F++S G+P+ ++ L V G + + + G
Sbjct: 416 PIMAAGGIGRI---RKQHAFKKSIAPGSPIIVLGGPALLVGLGGGAASSMNAGEGSEELD 472
Query: 266 SAYSTIGRSSLETRANL 316
A G ++ RA +
Sbjct: 473 FASVQRGNPEMQRRAQM 489
>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +1
Query: 190 GLPTCQ*VVRFYCRFAFQHRRTAFPQCVFDHWQVLPGDPCEPQSKPYN 333
GLP + +V Y + R P+ +F W +L G+ C + Y+
Sbjct: 113 GLPVDKLLVLEYMFYQCIDYRLVVPKHIFARWSLLVGECCAHATARYD 160
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 25.0 bits (52), Expect = 9.7
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 189 RPTYLSMSR-SVLLPICVPTPADGLPAVRIRPLAGPPWRPVRTSEQALQR 335
+P +L R LLP + + G+PA + P+ PP P R S A QR
Sbjct: 1008 KPDHLVAPRVKPLLPPRSGSSSSGVPAPNLTPVNVPPTPPPRKS-SASQR 1056
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,695,712
Number of Sequences: 5004
Number of extensions: 56675
Number of successful extensions: 118
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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