Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0531
(663 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 140 7e-34
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 89 3e-18
SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33) 81 6e-16
SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15) 61 7e-10
SB_19451| Best HMM Match : EFG_C (HMM E-Value=1.8e-13) 34 0.12
SB_51718| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3) 29 3.4
SB_48404| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0) 28 7.8
SB_36048| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05) 28 7.8
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 140 bits (340), Expect = 7e-34
Identities = 67/82 (81%), Positives = 71/82 (86%)
Frame = +2
Query: 11 RRCLYACLLTAQPRLMEPVNLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVK 190
RR LYAC+LTA+P L+EPV EIQCPE AVGGIYGVLNRRRG V EES VAGTPMFIVK
Sbjct: 701 RRVLYACMLTAKPCLLEPVYSVEIQCPESAVGGIYGVLNRRRGQVLEESNVAGTPMFIVK 760
Query: 191 AYLPVNESFGFTADLRSNTGGR 256
AYLPV ESFGFTADLRS TGG+
Sbjct: 761 AYLPVMESFGFTADLRSKTGGQ 782
Score = 70.5 bits (165), Expect = 1e-12
Identities = 31/42 (73%), Positives = 33/42 (78%)
Frame = +1
Query: 256 AFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLP 381
AFPQCVFDHWQVLPGD + S P VV TRKRKGLKEG+P
Sbjct: 783 AFPQCVFDHWQVLPGDVHDLASMPGQVVANTRKRKGLKEGIP 824
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 89.0 bits (211), Expect = 3e-18
Identities = 39/82 (47%), Positives = 55/82 (67%)
Frame = +2
Query: 11 RRCLYACLLTAQPRLMEPVNLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVK 190
RR Y+ L A PRLMEP E+Q P V +Y VL RRRGHV +++ V G+P++ +K
Sbjct: 681 RRVAYSAFLMATPRLMEPYFFVEVQAPADCVSSVYTVLARRRGHVTQDAPVPGSPLYTIK 740
Query: 191 AYLPVNESFGFTADLRSNTGGR 256
A++P +SFGF DLR++T G+
Sbjct: 741 AFIPAIDSFGFETDLRTHTQGQ 762
Score = 31.5 bits (68), Expect = 0.63
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 256 AFPQCVFDHWQVLPGDPCE 312
AF VF HWQ++PGDP +
Sbjct: 763 AFCLSVFHHWQIVPGDPLD 781
>SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33)
Length = 119
Score = 81.4 bits (192), Expect = 6e-16
Identities = 35/72 (48%), Positives = 50/72 (69%)
Frame = +2
Query: 41 AQPRLMEPVNLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFG 220
A PRLMEP E+Q P V +Y VL RRRGHV +++ V G+P++ +KA++P +SFG
Sbjct: 1 ATPRLMEPYFFVEVQAPADCVSSVYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFG 60
Query: 221 FTADLRSNTGGR 256
F DLR++T G+
Sbjct: 61 FETDLRTHTQGQ 72
Score = 31.5 bits (68), Expect = 0.63
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 256 AFPQCVFDHWQVLPGDPCE 312
AF VF HWQ++PGDP +
Sbjct: 73 AFCLSVFHHWQIVPGDPLD 91
>SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)
Length = 549
Score = 61.3 bits (142), Expect = 7e-10
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Frame = +2
Query: 44 QP-RLMEPVNLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFG 220
QP RLM + C IQ +G +Y V+ RR G V E G+ +F V+A LPV ESFG
Sbjct: 407 QPMRLMAAMYTCHIQATAEVLGRMYAVIARREGRVLSEEMKEGSDVFDVEAVLPVAESFG 466
Query: 221 FTADLRSNTGG 253
F+ ++R T G
Sbjct: 467 FSEEIRKRTSG 477
>SB_19451| Best HMM Match : EFG_C (HMM E-Value=1.8e-13)
Length = 238
Score = 33.9 bits (74), Expect = 0.12
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +2
Query: 104 GGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGR 256
G + +NRR G V G F + A +P+N+ FG+ +LRS T G+
Sbjct: 155 GTVIAGVNRRHGQVTGTDANEG--YFTLFAEVPLNDMFGYATELRSQTQGK 203
>SB_51718| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1602
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +3
Query: 234 CVPTPADGLPAVRIRPLAGPPWRPVRTSEQALQ 332
C P P DG +P P+ PV TS+ Q
Sbjct: 566 CTPPPRDGSAKPATQPFVSQPYTPVDTSKAPFQ 598
>SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3)
Length = 811
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 240 PTPADGLPAVRIRPLAGPPWRPVRTSEQALQ 332
P P DG P +P P+ PV TS+ Q
Sbjct: 242 PLPRDGAPKPATQPFVSQPYSPVDTSKAPFQ 272
>SB_48404| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 173
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 331 CRACSEVRTGLQGGPANGRIRTAGRPSAG 245
CR C++ ++ ++G PAN RT + G
Sbjct: 17 CRTCTDFKSWMRGNPANKSNRTKSSQNTG 45
>SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0)
Length = 808
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +1
Query: 289 VLPGDPCEPQS-KPYNVVQETRK 354
+LP PCEP S KPY E R+
Sbjct: 65 ILPASPCEPDSPKPYTPESEGRE 87
>SB_36048| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 257 PSRSAYSTIGRSSLETRANLRASPTTLYRKRERGKD*RKVS 379
P+ + S + RS +TRAN+R SP +RG K S
Sbjct: 170 PTPATRSVLKRSPGKTRANIRGSPRYHDHSHQRGSPKTKTS 210
>SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05)
Length = 200
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +1
Query: 220 FYCRFAFQHRRTAF-PQCVFDHWQVLPGDPCEPQ-SKPYNVVQ 342
F CR+ QH +T F Q + W +P P P +P + Q
Sbjct: 24 FVCRYRVQHNKTVFKTQVILTGWNPVPWLPEPPDFYRPVTISQ 66
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,612,513
Number of Sequences: 59808
Number of extensions: 442423
Number of successful extensions: 1044
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -