Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0529
(513 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 28 0.94
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3... 27 1.6
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 1.6
SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac... 27 2.2
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ... 25 5.0
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 25 5.0
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc... 25 6.7
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom... 25 6.7
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 6.7
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 25 8.8
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90... 25 8.8
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 27.9 bits (59), Expect = 0.94
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +1
Query: 283 IGAAITIGDVKSNLQINLFGREVGPAVNNFLEKIPVYLTDYAAE-VSRVLEYVAQLV 450
+ AAIT K + + F +E G V E+I + DY AE S++LE QL+
Sbjct: 94 VNAAITYCKDKDTIDESEFDKETGVGVVLTPEQIEQLVGDYVAENKSKILEQRYQLL 150
>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 449
Score = 27.1 bits (57), Expect = 1.6
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +1
Query: 292 AITIGDVKSNLQINLFGREVGPAVNNFL-EKIPVYLTDYA 408
AITIGD + L + +++GP V +F + +P +LT ++
Sbjct: 178 AITIGDNSTLLYTSWLFQKIGPPVLSFSDDDVPGFLTHFS 217
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 1.6
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 321 PPNQSLRTRSWTSRQQLPREDPCLPDGLRSRGQPCSGVRRP 443
PP S+ S S +P + P +P L QP + V+ P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP 184
>SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 26.6 bits (56), Expect = 2.2
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Frame = -3
Query: 238 LSNDVLKGKSSGSERPQD-----AAENADFSFSGTD 146
LSND L+ S + P D + ENAD+SFS D
Sbjct: 160 LSNDNLEVDHSNTNEPADENKNQSIENADYSFSPED 195
>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 846
Score = 25.4 bits (53), Expect = 5.0
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -3
Query: 256 GDGSGSLSNDVLKGKSSGSERPQ-DAAENADFSFSG 152
G GSG L ND L+ K S P +NA S G
Sbjct: 117 GPGSGKLLNDTLQSKISSIHMPHVQQGDNAVVSSVG 152
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.4 bits (53), Expect = 5.0
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 334 LFGREVGPAVNNFLEKIPVYLTDYAAEVSRVLEYVAQLVIN 456
+ R++GP V F+ K+P L + ++ + + V +LV+N
Sbjct: 972 IHNRKMGPTVKKFISKLP--LLNINVDLLPLTKNVLRLVLN 1010
>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1106
Score = 25.0 bits (52), Expect = 6.7
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 379 KIPVYLTDYAAEVSRVLEYVAQL 447
K+P + DY EV R+++ A L
Sbjct: 968 KVPTFYADYVNEVKRIIQRNANL 990
>SPBC725.14 |arg6||acetylglutamate synthase Arg6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 25.0 bits (52), Expect = 6.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2
Query: 341 PKRLIWRLDLTSPI 300
PK LIWR LT+P+
Sbjct: 436 PKELIWRSRLTNPV 449
>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = +3
Query: 345 RSWTSRQQLPREDPCLPDGLRSRGQPCSGVRRPTRHQQITVNYSND 482
+ + SR P + C L+++G C+G +H+ + SN+
Sbjct: 20 KPFRSRTPSPEREYCSDCPLQAKGSACNGNSHSLKHETNGASSSNN 65
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 24.6 bits (51), Expect = 8.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 11 SAIINFSGRVTDVKADDFSSLHLRRVSYVGTRLN 112
SAI++ ++ DD ++RRV+ VG R+N
Sbjct: 1264 SAIVSKLNQILSDFRDDLLEHNVRRVTIVGGRIN 1297
>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 24.6 bits (51), Expect = 8.8
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +1
Query: 319 NLQINLFGREVGPAVNNFLEKIPVYLTDYAAEVSRVLEYVAQLVINRL 462
N Q+ L R+ +N +E+ + + AE+ E + +LV+NRL
Sbjct: 149 NYQVKLI-RDFLKFINEKIEQYEPWASGSQAEIDNAKEGMEKLVLNRL 195
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,781,833
Number of Sequences: 5004
Number of extensions: 30735
Number of successful extensions: 105
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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