Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0529
         (513 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    24   1.1  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   3.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   3.2  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               22   4.3  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   5.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.9  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -1

Query: 276 DNDVVCEETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAETL 130
           DN VV  E   V +  T   A+P +A+++  +L+   S +   T AET+
Sbjct: 157 DNVVVAYEP--VWAIGTGKTATPQQAQEVHEKLRNWFSKNVNQTVAETV 203


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 243 VASATTFSRASPPEAKDLRTRLKMRISP 160
           +  +T+F R  PP A   R  L  R  P
Sbjct: 378 IGPSTSFPRFIPPNAYRFRPPLNPRFGP 405


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +3

Query: 420 PCSGVRRPTRHQQITVNYSNDTCESKINY 506
           P   ++   RH ++    + D C+ +INY
Sbjct: 200 PMPTLKGDGRHMEVIKIKNFDNCDQRINY 228


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 459 ITVNYSNDTCESKINYV 509
           I  N S D CE+ +N++
Sbjct: 119 INANKSTDKCENGLNFI 135


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 288 SCNNYW 305
           SCNNYW
Sbjct: 100 SCNNYW 105


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 321  PPNQSLRTRSWTSRQQLPREDP 386
            PP  S  T S   +QQLP   P
Sbjct: 1269 PPAYSCGTVSVPQQQQLPPSSP 1290


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,701
Number of Sequences: 438
Number of extensions: 1961
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)