Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0529
         (513 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42870.1 68418.m05225 lipin family protein contains Pfam prof...    29   2.4  
At3g13410.1 68416.m01686 expressed protein                             28   3.2  
At1g35420.1 68414.m04394 dienelactone hydrolase family protein l...    27   5.6  
At5g56250.2 68418.m07020 expressed protein                             27   7.4  
At5g56250.1 68418.m07019 expressed protein                             27   7.4  
At4g09790.1 68417.m01608 F-box family protein hypothetical prote...    27   9.8  
At1g62480.1 68414.m07050 vacuolar calcium-binding protein-relate...    27   9.8  

>At5g42870.1 68418.m05225 lipin family protein contains Pfam
           profile: PF04571 lipin, N-terminal conserved region
          Length = 930

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -3

Query: 235 SNDVLKGKS-SGSERPQDAAENADFSFSGTD*C*NSGNSQD*VESGADVTDTTQMQGAE 62
           + D  K +S SG    Q   E   FSFS  D C   GNS      G+  +DT ++ G E
Sbjct: 374 AGDFEKSQSASGESILQPEIEEEQFSFSDLDECKPGGNS----SVGSSSSDTVKVDGKE 428


>At3g13410.1 68416.m01686 expressed protein
          Length = 321

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -1

Query: 360 GWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEETEAVASATTFS 220
           GWSNF   E  LE   D+A  +   ++  +DV  +     A   T +
Sbjct: 70  GWSNFLCSEKKLEQPVDVALVFIGRELLSSDVSSKRNSDPALVNTLN 116


>At1g35420.1 68414.m04394 dienelactone hydrolase family protein low
           similarity to dienelactone hydrolase [Rhodococcus
           opacus] GI:23094407; contains Pfam profile PF01738:
           Dienelactone hydrolase family
          Length = 310

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 32  GRVTDVKADDFSSLHLRRVSYVGTRLNLVLA 124
           GRV DV A D S      VS+ GTR++  +A
Sbjct: 205 GRVVDVLATDESGYFSTGVSFYGTRIDSAVA 235


>At5g56250.2 68418.m07020 expressed protein
          Length = 811

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
 Frame = -1

Query: 390 DRDLL*EVVDGWSNFASEEID-LEVRFDIANSYCSSDVTDND--VVCEETEAVASATTFS 220
           DR+     V   SNFA+ E   L +   I      S   DND    C+  E     TTF 
Sbjct: 657 DRNSSESPVSAISNFAAPETQTLSLHNIITTDKRPSRFRDNDQSCCCQRKEKALEDTTFC 716

Query: 219 RASPPE 202
           +  PP+
Sbjct: 717 QPPPPQ 722


>At5g56250.1 68418.m07019 expressed protein
          Length = 811

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
 Frame = -1

Query: 390 DRDLL*EVVDGWSNFASEEID-LEVRFDIANSYCSSDVTDND--VVCEETEAVASATTFS 220
           DR+     V   SNFA+ E   L +   I      S   DND    C+  E     TTF 
Sbjct: 657 DRNSSESPVSAISNFAAPETQTLSLHNIITTDKRPSRFRDNDQSCCCQRKEKALEDTTFC 716

Query: 219 RASPPE 202
           +  PP+
Sbjct: 717 QPPPPQ 722


>At4g09790.1 68417.m01608 F-box family protein hypothetical protein
           -Arabidopsis thaliana;PID:g2245079; contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
           protein interaction domain
          Length = 351

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 432 VRRPTRHQQITVNYSNDTCESKI 500
           + RP R +Q+ V Y  DTC  +I
Sbjct: 207 MERPVREEQLAVLYQQDTCLMEI 229


>At1g62480.1 68414.m07050 vacuolar calcium-binding protein-related
           contains weak similarity to vacuolar calcium binding
           protein [Raphanus sativus] gi|9049359|dbj|BAA99394
          Length = 152

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -1

Query: 309 IANSYCSSDVTDNDVVCEETEAVASATTFSRASPPEAKDLR 187
           +  S    +VT  D+V EETE     T  ++   PE  +++
Sbjct: 41  VTESQAPVEVTTKDLVVEETEKPIEETEEAQVETPEVVEIK 81


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,498,003
Number of Sequences: 28952
Number of extensions: 167222
Number of successful extensions: 501
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)