Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0528
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    26   5.6  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    25   9.9  
SPBC4B4.06 |vps25||ESCRT II complex subunit Vps25|Schizosaccharo...    25   9.9  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    25   9.9  

>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +1

Query: 163 LFIIFLFEFMLDIRYALFFFFWKRYLEAYSIF*CLNNVVWFQLYSVCHISSFAIFNYLDI 342
           +FI FLF F     Y L F + + +   +     L   VW    S   ++SF   ++L +
Sbjct: 295 IFISFLFSF-----YVLIFIWVRLFARLFLRGSTLVGSVWVLPRSSWVLASFYSLHFLWL 349

Query: 343 ATFF 354
            TFF
Sbjct: 350 CTFF 353


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = -3

Query: 431 TPKRNLLYFCQHYCTI*CVARF--DERKKKVAI 339
           T K N+  F  H C   C+AR    E K+K+ I
Sbjct: 849 TKKGNIARFINHSCAPNCIARIIRVEGKRKIVI 881


>SPBC4B4.06 |vps25||ESCRT II complex subunit
           Vps25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 584 RLPSLYTTPQLFSRSLN 634
           R+PS+Y  P  F+R LN
Sbjct: 2   RVPSIYNFPPFFTRQLN 18


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 493 FLSPPFFTYLKITIARAQSVS 555
           FL P   TY++ T+AR+  +S
Sbjct: 581 FLKPSLMTYVRSTVARSMELS 601


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,532,671
Number of Sequences: 5004
Number of extensions: 52006
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)