Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0528
         (670 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1179 - 26720533-26721021,26721329-26722597                       29   2.5  
10_08_0343 - 16960764-16960895,16961166-16961171,16961272-169616...    29   2.5  
06_03_1140 - 27942927-27942986,27943134-27943328                       29   2.5  
01_02_0091 - 11023912-11024017,11024112-11024185,11024478-110248...    28   7.7  

>12_02_1179 - 26720533-26721021,26721329-26722597
          Length = 585

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +1

Query: 172 IFLFEFMLDIRYALFFFFWKRYLEAYSI 255
           +FLF F++ I  ALFF +WK Y E Y +
Sbjct: 557 VFLFVFVVAI-IALFFPWWKDYKEPYVV 583


>10_08_0343 -
           16960764-16960895,16961166-16961171,16961272-16961640,
           16962118-16962304,16962567-16962759,16962864-16963137,
           16963215-16963374,16963985-16964199,16964784-16964876,
           16965192-16965260,16965293-16965445,16965534-16965737,
           16966416-16966691,16967336-16967431,16967585-16967788,
           16967877-16968069,16968229-16968374,16968771-16969425,
           16971462-16971774,16971989-16972139,16972602-16973815,
           16973933-16974182,16974784-16975035
          Length = 1934

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 502 PPFFTYLKITIARAQSVSKNPSRRNYKSPPKPLHNAS 612
           P     +KI+IAR   V +  +R  + SPP PLH  S
Sbjct: 113 PALVPKMKISIAR--KVDRRKTRSQWDSPPMPLHAVS 147


>06_03_1140 - 27942927-27942986,27943134-27943328
          Length = 84

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/42 (26%), Positives = 27/42 (64%)
 Frame = +3

Query: 273 CRVVSIVQCLSYFKFRNI*LSGYSYLFFSFIEAGHTLYSAIV 398
           C+++ I++C+  +KF ++ +SG  Y+  S +  G+ + S ++
Sbjct: 44  CKILGILKCIVKYKFWDV-VSGTLYVVLSVLTPGNVVGSVLI 84


>01_02_0091 -
           11023912-11024017,11024112-11024185,11024478-11024834,
           11024938-11025166,11025468-11025559,11026099-11026326,
           11027108-11027356,11027429-11027471,11027589-11027836,
           11027922-11028035,11028122-11028322,11028417-11028593,
           11028725-11028853,11029210-11029287,11029369-11029464,
           11029563-11029634,11031549-11031677,11032105-11032220,
           11033048-11033204,11033343-11033426,11033513-11033574,
           11034901-11035067,11035162-11035226,11035315-11035371,
           11035547-11035633,11036638-11036703,11036810-11036908
          Length = 1193

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
 Frame = -1

Query: 496 KSNLFSKRAVDKICMETP-ELEQHQKETCCTFVNTIALY---NVWPASMNEKK 350
           K +L  K+   +IC+ETP + E H   +C +F ++  ++   N  P  ++ KK
Sbjct: 608 KLDLLIKKGSQRICIETPGQHELHLINSCISFGSSPVVFDTKNPMPVHISAKK 660


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,161,885
Number of Sequences: 37544
Number of extensions: 284023
Number of successful extensions: 536
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)