Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0528
         (670 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61956-5|AAB03178.2|  286|Caenorhabditis elegans Serpentine rece...    29   3.0  
AF125954-5|AAD14708.2|  338|Caenorhabditis elegans Seven tm rece...    29   3.0  
AC006769-6|AAF60582.1|  274|Caenorhabditis elegans Hypothetical ...    29   3.0  
AF039048-12|AAB94241.2|  296|Caenorhabditis elegans Hypothetical...    28   5.2  
Z49132-1|CAA88981.1|  137|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U53337-3|AAA96185.2|  194|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>U61956-5|AAB03178.2|  286|Caenorhabditis elegans Serpentine
           receptor, class x protein20 protein.
          Length = 286

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 210 FVFFFLEKIFRSIFYFLMFK*CRVVSIVQCLSYFKFRNI*LSGYSYLF-FSFIEAGH 377
           +V F  EK+F +   ++M      ++IV C ++++     L  ++ L+ FS+ E  H
Sbjct: 106 YVIFLYEKVFSNFNTYIMICMAYAIAIVMCTTFYELLECYLYFHADLWIFSYPETEH 162


>AF125954-5|AAD14708.2|  338|Caenorhabditis elegans Seven tm
           receptor protein 120 protein.
          Length = 338

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = +1

Query: 175 FLFEFMLDIRYALFFFFWKRYLEAYSIF*CLNNVVWFQLYSVCHISSFAIFNYLDIATFF 354
           F   F++  R    F  +K  + ++SIF  L  +V      + HIS   +  Y  + T F
Sbjct: 23  FTLLFLIHTRATRHFGSYKLLMASFSIFSILYALVEVLTQPIMHISGTGLMLY--VGTTF 80

Query: 355 FRSSKRATHYI 387
              SK   H+I
Sbjct: 81  LPISKEFGHFI 91


>AC006769-6|AAF60582.1|  274|Caenorhabditis elegans Hypothetical
           protein Y45G12C.6 protein.
          Length = 274

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = +1

Query: 175 FLFEFMLDIRYALFFFFWKRYLEAYSIF*CLNNVVWFQLYSVCHISSFAIFNYLDIATFF 354
           F   F++  R    F  +K  + ++SIF  L  +V      + HIS   +  Y  + T F
Sbjct: 23  FTLLFLIHTRATRHFGSYKLLMASFSIFSILYALVEVLTQPIMHISGTGLMLY--VGTTF 80

Query: 355 FRSSKRATHYI 387
              SK   H+I
Sbjct: 81  LPISKEFGHFI 91


>AF039048-12|AAB94241.2|  296|Caenorhabditis elegans Hypothetical
           protein F16B4.10 protein.
          Length = 296

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 300 LSYFKFRNI*LSGYSYLFFSFIEAGHTLYSA 392
           L YF+F    L G SY  +SF   G T+Y +
Sbjct: 39  LFYFRFHIDVLFGLSYFLYSFFILGFTIYGS 69


>Z49132-1|CAA88981.1|  137|Caenorhabditis elegans Hypothetical
           protein ZK666.1 protein.
          Length = 137

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 304 HISSFAIFNYLDIATFFFRSSKRATH 381
           +I SFA++N  D+  FF R+ + +TH
Sbjct: 5   YIPSFALYNNADMFQFFPRNKRLSTH 30


>U53337-3|AAA96185.2|  194|Caenorhabditis elegans Hypothetical
           protein R02E12.6 protein.
          Length = 194

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/42 (33%), Positives = 28/42 (66%)
 Frame = -1

Query: 493 SNLFSKRAVDKICMETPELEQHQKETCCTFVNTIALYNVWPA 368
           S++ SK ++ K  + T E EQ Q+++CCT+ +++ +  +W A
Sbjct: 10  SSITSKSSIAKAEIITMEEEQ-QRQSCCTWFHSLKV-QIWIA 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,938,972
Number of Sequences: 27780
Number of extensions: 286562
Number of successful extensions: 713
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)