Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0528
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              23   2.0  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   3.5  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   6.1  

>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -3

Query: 149 PIANDHIILSISSLYQRMSPDFFIYKNLNQLLH 51
           PI++ + ++ IS + +     FF YK +NQ+L+
Sbjct: 106 PISDPNALIKISKILEC----FFKYKTINQILN 134


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 131 IILSISSLYQRMSPDFFIYKNLNQLLH 51
           + LSIS L +   PD + Y   +  LH
Sbjct: 75  LALSISMLARIWKPDTYFYNGKHSYLH 101


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 547 SVSKNPSRRNYKSPPKPLH 603
           S+S N +  NY +  KPLH
Sbjct: 317 SLSNNYNYNNYNNNYKPLH 335


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,119
Number of Sequences: 438
Number of extensions: 3530
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)