Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0527
         (446 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   5.3  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   7.0  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    25   7.0  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    25   7.0  
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    24   9.3  

>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -1

Query: 263  FTQILVPLKKFPIVM*KNVFPDDQLDNCEKGCVINTSL 150
            FT+I +PL   P+ +    F D Q  N +   V N  L
Sbjct: 1598 FTEIFIPLMLVPLTLVSYFFIDSQPGNPDPSKVTNPIL 1635


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 282 MDDLISSYIAVLRASLNQNSR 344
           +DDLIS    VLR +LN  SR
Sbjct: 312 LDDLISEEFRVLRFNLNSVSR 332


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +1

Query: 208 TFFHMTMGNFLRGTKICVKL--RLATKWMILFHHTLLSSVLL*IK 336
           TF HM     L GTK   KL   LA   ++  +H L+  V+  IK
Sbjct: 68  TFGHMEAAKLLSGTKYSEKLIGYLAVALLLNENHELMKLVINSIK 112


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +3

Query: 240 KRN*DLCETSLGYKMDDLISSYIAVLR 320
           K+  +  + S+G KMDDL SS +++L+
Sbjct: 60  KKTYEDAKLSMGEKMDDLNSSIVSLLQ 86


>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
 Frame = +1

Query: 64  IKMALVLFIHKVGIHISCLLSPYS----GCLLCRDVLITHPFSQLSNW 195
           IK  + +FI  +GI+     +PY      C L  D L T P S +  W
Sbjct: 227 IKDLITIFIFLIGINYMAFYNPYGFMEPDCALPADPLKT-PMSIVPEW 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,829,003
Number of Sequences: 5004
Number of extensions: 36097
Number of successful extensions: 59
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)