Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0527
         (446 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0259 + 13578654-13578679,13578877-13579033                       30   0.74 
04_04_1390 - 33184233-33184478,33184601-33184705,33184783-331848...    29   2.3  
04_04_0592 + 26477974-26479311                                         27   9.1  
04_01_0330 - 4369326-4370852                                           27   9.1  

>04_03_0259 + 13578654-13578679,13578877-13579033
          Length = 60

 Score = 30.3 bits (65), Expect = 0.74
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 97  VGIHISCLLSPYSGCLLCRDVLITHPFSQLSN 192
           +GI    +  P SGC+LC+   +  P++Q++N
Sbjct: 16  IGILCGFMNEPLSGCVLCQQFDVMAPYTQVTN 47


>04_04_1390 -
           33184233-33184478,33184601-33184705,33184783-33184890,
           33184967-33185101,33185263-33185363,33185495-33185564,
           33185642-33185758,33186001-33186138,33186371-33186439,
           33186556-33186645,33186758-33186940,33187020-33187052
          Length = 464

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 20/93 (21%), Positives = 45/93 (48%)
 Frame = +3

Query: 36  YPEMVIVGINKNGVSLVHPQSRNSY*LPSFTLFWLPSLQGCVDHAPLFTII*LVVWKHIF 215
           +P+ +   +    ++  HP+ R +Y  PS+   W    +G + +    T++  +  + + 
Sbjct: 94  FPDKISPQLKLVQLTAEHPEYRKNYNFPSYKEGWKVLREGKITNFMKSTML-AIDCEMVL 152

Query: 216 SHDNGKFLKRN*DLCETSLGYKMDDLISSYIAV 314
            HD  + L R   +  ++L  K+D+L++   AV
Sbjct: 153 CHDGTEALVRV-CVVNSNLEVKLDELVNPLKAV 184


>04_04_0592 + 26477974-26479311
          Length = 445

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 118 LLSPYSGCLLCRDVLITHPFSQLSNWSSGNTFFHMTMGNFLR 243
           LL  Y G  L  DV++  PFS L N + G      + G+++R
Sbjct: 263 LLYKYGGVYLDADVVVLRPFSDLRN-AIGAQAVDASTGDWMR 303


>04_01_0330 - 4369326-4370852
          Length = 508

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = +1

Query: 118 LLSPYSGCLLCRDVLITHPFSQLSNWSSGNTFFHMTMGNFLR 243
           +++P +G       + T PF   ++W+   +  ++T G F+R
Sbjct: 128 MVNPVTGAHRALPAITTCPFFYTTSWAGRGSHVNLTAGPFMR 169


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,881,853
Number of Sequences: 37544
Number of extensions: 204131
Number of successful extensions: 276
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)