Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0527
         (446 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55874| Best HMM Match : MyTH4 (HMM E-Value=1.2e-05)                 61   4e-10
SB_44214| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.020
SB_36861| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_17620| Best HMM Match : CRAL_TRIO (HMM E-Value=9.2)                 27   9.3  
SB_24047| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  

>SB_55874| Best HMM Match : MyTH4 (HMM E-Value=1.2e-05)
          Length = 293

 Score = 61.3 bits (142), Expect = 4e-10
 Identities = 27/69 (39%), Positives = 51/69 (73%)
 Frame = +1

Query: 76  LVLFIHKVGIHISCLLSPYSGCLLCRDVLITHPFSQLSNWSSGNTFFHMTMGNFLRGTKI 255
           L++ I+K G++   L++P++     +++L T+PF+++SNWSSGNT+FHMT+G+ ++G+K+
Sbjct: 203 LLIAINKSGVN---LINPHT-----KEILATYPFTKISNWSSGNTYFHMTIGSLVKGSKL 254

Query: 256 CVKLRLATK 282
             +  L  K
Sbjct: 255 LCETSLGYK 263



 Score = 54.0 bits (124), Expect = 5e-08
 Identities = 33/110 (30%), Positives = 59/110 (53%)
 Frame = +3

Query: 15  KQTSDPAYPEMVIVGINKNGVSLVHPQSRNSY*LPSFTLFWLPSLQGCVDHAPLFTII*L 194
           +Q ++P +P+ +++ INK+GV+L++P ++       FT     S      H  +      
Sbjct: 192 QQGTEPNFPDNLLIAINKSGVNLINPHTKEILATYPFTKISNWSSGNTYFHMTI------ 245

Query: 195 VVWKHIFSHDNGKFLKRN*DLCETSLGYKMDDLISSYIAVLRASLNQNSR 344
                      G  +K +  LCETSLGYKMDDL++SYI+++  ++N+  +
Sbjct: 246 -----------GSLVKGSKLLCETSLGYKMDDLLTSYISLMLTNMNKQRK 284


>SB_44214| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 126

 Score = 35.5 bits (78), Expect = 0.020
 Identities = 11/29 (37%), Positives = 25/29 (86%)
 Frame = +3

Query: 15  KQTSDPAYPEMVIVGINKNGVSLVHPQSR 101
           +Q ++P +P+ +++ INK+GV+L++PQ++
Sbjct: 98  QQGTEPNFPDNLLIAINKSGVNLINPQTK 126


>SB_36861| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 791

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 204 KHIFSHDNGKFLKRN*DLCETSLGYKMDDLISSYIAVL 317
           KH F  D G F  +  DL E  +   MDD++ S +  L
Sbjct: 417 KHYFLMDLGDFFVQFMDLAEDEMKKNMDDIMPSRLETL 454


>SB_17620| Best HMM Match : CRAL_TRIO (HMM E-Value=9.2)
          Length = 254

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 255 LCETSLGYKMDDLISSYIAVLRASLNQNSRG 347
           L +TSL +K DDL   Y+ +     ++N +G
Sbjct: 172 LTKTSLEFKHDDLEQKYVCIKHTEQSKNYQG 202


>SB_24047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2905

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
 Frame = +1

Query: 112 SCLLSPYSGCL--LCRDVLITHPFSQLSNWSSGNTFFHMTMGNFLRGTKICVKLRLATKW 285
           SC + PY   +  +  D++I    + L  WS     F   + + + G K  +  + A KW
Sbjct: 413 SCSVEPYKSIVGHMDPDMVID---AALFLWSKCKIHFQRVVSSSMEGCKFVLNDQNADKW 469

Query: 286 --MILFHHTLLS 315
             MI   HT LS
Sbjct: 470 VHMITVVHTALS 481


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,067,940
Number of Sequences: 59808
Number of extensions: 256016
Number of successful extensions: 417
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)