Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0527
         (446 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain, un...    48   2e-06
AL117195-11|CAB55019.1|  185|Caenorhabditis elegans Hypothetical...    30   0.67 
U64849-1|AAC48052.3|  936|Caenorhabditis elegans Daf-12, redunda...    27   8.2  

>U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain,
            unconventional myosinprotein 6 protein.
          Length = 2098

 Score = 48.4 bits (110), Expect = 2e-06
 Identities = 16/34 (47%), Positives = 29/34 (85%)
 Frame = +1

Query: 151  RDVLITHPFSQLSNWSSGNTFFHMTMGNFLRGTK 252
            +++L+ +PF+ + NW+SGNT+F+MT+GN L+G +
Sbjct: 2024 KNLLVQYPFNVICNWTSGNTYFNMTVGNMLKGNE 2057



 Score = 43.6 bits (98), Expect = 7e-05
 Identities = 35/112 (31%), Positives = 59/112 (52%)
 Frame = +3

Query: 3    FFEVKQTSDPAYPEMVIVGINKNGVSLVHPQSRNSY*LPSFTLFWLPSLQGCVDHAPLFT 182
            FF V Q SD   P+ +++ IN+ GV++ H  ++N        L   P    C +     T
Sbjct: 1992 FFPVSQYSDLNLPDRLLLAINQTGVNIYHLDTKN-------LLVQYPFNVIC-NWTSGNT 2043

Query: 183  II*LVVWKHIFSHDNGKFLKRN*DLCETSLGYKMDDLISSYIAVLRASLNQN 338
               + V  ++   + GK L     L +T++GYKMDDL++SYI++L ++ N +
Sbjct: 2044 YFNMTVG-NMLKGNEGKKL-----LLDTTVGYKMDDLLTSYISLLISNQNNH 2089


>AL117195-11|CAB55019.1|  185|Caenorhabditis elegans Hypothetical
           protein Y57A10A.16 protein.
          Length = 185

 Score = 30.3 bits (65), Expect = 0.67
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +3

Query: 198 VWKHIFSHDNGKFLKRN*DLCETSLGYKMDDLISSYIAVLR 320
           VWK++F  +  K  + N D C T L  + D ++++YI+V R
Sbjct: 88  VWKNLFGKEADKLERSNDDHC-TYLLIEKDPMVNTYISVPR 127


>U64849-1|AAC48052.3|  936|Caenorhabditis elegans Daf-12, redundant
           with protein 1 protein.
          Length = 936

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 394 LVYSIYDYKLKYFHP*PLLF*FKEARR 314
           L  ++YDY++  FHP    F F+E  R
Sbjct: 205 LYCNLYDYRIPLFHPSHAKFEFREQSR 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,967,823
Number of Sequences: 27780
Number of extensions: 199497
Number of successful extensions: 354
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)