Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0527
         (446 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    24   0.66 
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    24   0.66 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   4.6  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   6.1  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   6.1  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   6.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   8.1  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 24.2 bits (50), Expect = 0.66
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 169 HPFSQLSNWSSGNTFFHMTMGNFLRGT 249
           H ++ +     GN FF     N LRGT
Sbjct: 258 HCWATIYKTEGGNAFFKGAFSNILRGT 284


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 24.2 bits (50), Expect = 0.66
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 169 HPFSQLSNWSSGNTFFHMTMGNFLRGT 249
           H ++ +     GN FF     N LRGT
Sbjct: 258 HCWATIYKTEGGNAFFKGAFSNILRGT 284


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 270 AKFHTDLSSS*EISH 226
           A FHTD+ +S  ++H
Sbjct: 792 ASFHTDIGNSQSLAH 806


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 178 SQLSNWSSGNTFFHMTMGN 234
           +Q  +WS GNT+  +   N
Sbjct: 18  TQAQHWSRGNTWLSLDNSN 36


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 178 SQLSNWSSGNTFFHMTMGN 234
           +Q  +WS GNT+  +   N
Sbjct: 18  TQAQHWSRGNTWLSLDNSN 36


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +1

Query: 172 PFSQLSNWSSGNTFFHMTMGNFLR 243
           P   ++NW SGN   H     F R
Sbjct: 341 PNGSVTNWVSGNHDNHRVASRFGR 364


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 285 DDLISSYIAVLRASLNQN 338
           DDL+S+Y  ++R   N N
Sbjct: 26  DDLLSNYNRLIRPVSNNN 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,192
Number of Sequences: 438
Number of extensions: 2251
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)