Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0524
         (527 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    23   2.2  
L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    22   3.8  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   3.8  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   5.1  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   8.9  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   8.9  

>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -3

Query: 390 GLRDNGIDTGSGDNRGRASLVDVQNDLHERSAVSN 286
           G R       +GD  G  S VD QN+  E S   N
Sbjct: 74  GKRSKRSKRPNGDTNGDTSQVDDQNESLEASVNEN 108


>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +1

Query: 124 YRCRTCHHR*VRAHFRRT 177
           + C+ CH R  R H  +T
Sbjct: 10  FECQECHKRFTRDHHLKT 27


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +1

Query: 124 YRCRTCHHR*VRAHFRRT 177
           + C+ CH R  R H  +T
Sbjct: 163 FECQECHKRFTRDHHLKT 180


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -3

Query: 513 SRDHWLGSNGSNVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGLRDNG 373
           S + W  +NG+N +N  R  +   + N+  S   G  + N     NG
Sbjct: 372 SNNRWHNNNGNNSNNHWRKNNPNDNRNNTSSRAQGETSRNSKNSGNG 418


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 153 SSMMAGPTAIGTKSSMMGAG 94
           + +M  PT  G++ S  GAG
Sbjct: 83  TQLMPSPTVSGSEMSSPGAG 102


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 153 SSMMAGPTAIGTKSSMMGAG 94
           + +M  PT  G++ S  GAG
Sbjct: 83  TQLMPSPTVSGSEMSSPGAG 102


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,970
Number of Sequences: 336
Number of extensions: 1884
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12782794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)