Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0524
         (527 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.14 |||aminoacyl-tRNA hydrolase |Schizosaccharomyces pom...    27   1.3  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    27   1.7  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   1.7  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    27   2.3  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   3.0  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    26   3.0  
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   4.0  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    26   4.0  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    25   7.0  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.0  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    25   7.0  
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    25   7.0  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   7.0  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   7.0  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    25   7.0  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   7.0  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    25   9.2  
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   9.2  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    25   9.2  

>SPAC19A8.14 |||aminoacyl-tRNA hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 205

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = -3

Query: 315 DLHERSAVSNGGKRRVVYDSGPTEIGTYSSTMAG 214
           +L +  A+S G   RV++D+G T+I + S+T+ G
Sbjct: 153 ELLQAQAMSLGLCARVIHDAGRTQIASGSATVLG 186


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -3

Query: 381 DNGIDTGSGDNRGRASLVDVQNDLHERSAVSNGGKRRVVYDSGPTEI 241
           D G DT  G N      +D   D++E    S G KR++ Y++GP  +
Sbjct: 448 DEGDDTLYGTNDAE---MDDMLDIYETDE-SVGSKRKIAYENGPLRL 490


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 324 VQNDLHERSAVSNGGKRRVVYDSGPTEIGTYSST 223
           + N+L  RS+  +GGK R+  DS       +SS+
Sbjct: 3   LSNELFHRSSKDHGGKSRICLDSSEDTYPPHSSS 36


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +1

Query: 262 VDNPPLAPVADSTPLVQIILNINQASSAPIVPGP 363
           V  PP+APVA   P V     +     AP VP P
Sbjct: 604 VPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQP 637



 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 259 IVDNPPLAPVADSTPLVQIILNINQASSAPIVPGPG 366
           +V   P  P   + P+V  + ++ Q  + P+VP  G
Sbjct: 657 VVPEAPSVPQPPAAPVVPEVPSVPQPPAVPVVPEAG 692



 Score = 24.6 bits (51), Expect = 9.2
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = +1

Query: 262 VDNPPLAPVADSTPLVQIILNINQASSAPIVPGP 363
           V  PP+APVA   P V           AP VP P
Sbjct: 574 VPQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQP 607


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
 Frame = -3

Query: 258 SGPTEIGTYSSTMAG---PTE-IGSNSLTMAGPTEMGSNSSMMAGPTAIGTKSSMMGAGP 91
           SG +     SST+     PTE  GS S +  G    GS+S     PT   T SS+   G 
Sbjct: 742 SGSSTFSRLSSTLTSSIIPTETFGSTSGSATGTRPTGSSSQGSVVPTT-STGSSVTSTGT 800

Query: 90  AT 85
            T
Sbjct: 801 GT 802


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 16/61 (26%), Positives = 26/61 (42%)
 Frame = -3

Query: 264 YDSGPTEIGTYSSTMAGPTEIGSNSLTMAGPTEMGSNSSMMAGPTAIGTKSSMMGAGPAT 85
           + S P+ +G+    +  P   GSN  T A    + + +S  +G       +SM    P T
Sbjct: 136 FPSVPSSLGSNHQFITTPPVNGSNEPTSAQTNHIITANSSPSGNAGSNASASMSVPPPLT 195

Query: 84  P 82
           P
Sbjct: 196 P 196


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -3

Query: 486 GSNVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGLRD 379
           GSNV +++  GD + D N  ++++   + DN GL D
Sbjct: 246 GSNVDDVEDSGDSSSDKN-SINHE---IRDNEGLED 277


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 21/78 (26%), Positives = 40/78 (51%)
 Frame = -3

Query: 492 SNGSNVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGLRDNGIDTGSGDNRGRASLVDVQND 313
           S+ SN S  + + DGA+   +G+ +DF  V+    + +N  D  +G+N      V ++ D
Sbjct: 342 SHSSNAS--ENIVDGAVTQANGIESDFTRVDHEPIIVNN--DDENGNNESENEEV-IEED 396

Query: 312 LHERSAVSNGGKRRVVYD 259
              R+ ++   + +VV D
Sbjct: 397 NLNRNVIAE-AQNQVVAD 413


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 475 DITPVAPKPVIARLPSF 525
           ++ P AP P IA++PSF
Sbjct: 23  ELFPQAPSPTIAQVPSF 39


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = -3

Query: 231 SSTMAGPTEIGSNSLTMAGPTEMGSNSSMMAGPTAIGTKSSMMGAGPAT 85
           SST++  +   S+  +    + M S+SS  + PT+  +  S   + P++
Sbjct: 304 SSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSS 352


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 1/95 (1%)
 Frame = -3

Query: 459 LGDGAIDNNHGLSNDFGFVNDNHGLRDNGIDTGSGDNRGRA-SLVDVQNDLHERSAVSNG 283
           LG    +NN+  SN   + N+N G  +      S   +G A S ++  +    +   +N 
Sbjct: 557 LGSSGNNNNNNNSNSGNYNNNNSGNNNQQHQQSSSSLQGLASSFLNSSSGNSNKQNYNNN 616

Query: 282 GKRRVVYDSGPTEIGTYSSTMAGPTEIGSNSLTMA 178
             +    ++        +S+  G ++ GS  L  A
Sbjct: 617 NNQNYGNNNNQNYNNNNNSSQGGNSQGGSGLLGQA 651


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 157 ELIYDGRSDSDRYKVVDDGSR 95
           EL+Y    D DR+ V+D G R
Sbjct: 262 ELVYPKLLDDDRFYVLDSGER 282


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -3

Query: 495 GSNGS-NVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGLRDNGID 367
           GSN S N+SN+        DN++   ND    N+N+    N  D
Sbjct: 509 GSNSSSNISNVANFDSAEDDNDNDNDNDRDSNNNNNNNNTNTDD 552


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 450 GAIDNNHGLSNDFGFVNDNHGL 385
           G ID N  +S  FGF+  N GL
Sbjct: 287 GIIDRNILVSRGFGFLKSNSGL 308


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = -3

Query: 402 NDNHGLRDNGIDTGSGDNRGRASLVDVQNDLHERSAVSN 286
           ND     D   D GS +   RASL   QN    +S   N
Sbjct: 18  NDTQSESDLSFDHGSSEKLNRASLPKTQNSAIPQSNALN 56


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -3

Query: 495 GSNGS-NVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGLRDNGID 367
           GSN S N+SN+        DN++   ND    N+N+    N  D
Sbjct: 509 GSNSSSNISNVANFDSAEDDNDNDNDNDRDSNNNNNNNNTNTDD 552


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = -2

Query: 205  DRFEFVDNGRSDGNGLELIYDGRSDSDRYKVVDDGSRSGNAGTYQALSRAGDSNG-HHGS 29
            +R    ++  S+ N  + + +G+  + R     D S   N+    A+SRAG SNG + G+
Sbjct: 1496 ERSSEANHRTSNDNKRDEVTEGKDKNKR----QDISGESNSRQNNAISRAGRSNGSNRGN 1551

Query: 28   EGQE 17
            + ++
Sbjct: 1552 DSRD 1555


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -2

Query: 166 NGLELIYDGRSDSDRYKVVDDGSRSGNAGTYQALSRAG 53
           +G E  +DG +      +  D +R GN  T +A +  G
Sbjct: 220 SGREWFWDGENAESDSSLNGDNTRGGNISTNRAFNNMG 257


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = -3

Query: 462 RLGDGAIDN-NHGLSNDFGFVND 397
           R+ + AID+ N G+S  FG++ND
Sbjct: 408 RIDNVAIDHLNRGVSGAFGWIND 430


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,651,071
Number of Sequences: 5004
Number of extensions: 32023
Number of successful extensions: 139
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)