Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0524
(527 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1591 + 27967065-27967090,27967236-27968054,27984940-279850... 31 0.43
02_02_0294 - 8651289-8651395,8651527-8651776 31 0.43
01_06_1795 - 39925019-39926029,39926265-39926408,39927200-399272... 31 0.76
07_03_1065 + 23711677-23711837,23711859-23712180,23713071-23713277 30 1.0
04_01_0460 + 5954548-5954816,5954940-5954997 30 1.0
01_05_0195 - 19111983-19112477,19112646-19113950,19114053-191143... 29 1.7
11_03_0031 - 9094643-9095824,9095945-9096034,9096141-9096216,909... 29 2.3
10_01_0020 + 239026-239514 29 2.3
07_01_0975 + 8223269-8224354 29 2.3
07_01_0032 + 258788-259201,259297-259462,260938-261443 29 3.1
03_06_0452 - 34028791-34028818,34028977-34029020,34029457-34030017 29 3.1
04_03_0784 - 19610370-19611548,19611830-19611919,19612001-196120... 28 4.0
03_05_0346 + 23335753-23335854,23336268-23336473,23336530-233367... 28 4.0
03_01_0246 - 1918935-1919689,1919771-1919819,1919894-1920049 28 4.0
01_06_0644 + 30821811-30821855,30822707-30822976,30823079-308243... 28 4.0
12_01_0777 - 7095081-7096259,7096636-7096725,7096827-7096902,709... 28 5.3
10_08_0439 - 17926021-17927133 28 5.3
09_02_0564 + 10698710-10699294 28 5.3
04_01_0229 - 2897484-2900402 28 5.3
01_06_0832 + 32291454-32291537,32291584-32291661,32292081-322928... 28 5.3
10_08_0769 + 20452130-20453314 27 7.1
08_02_1280 + 25846557-25846871,25847278-25847349,25847441-258475... 27 7.1
06_01_0184 + 1433798-1434442 27 7.1
03_05_0737 + 27258320-27259007,27259263-27259435,27262684-272627... 27 7.1
03_02_0122 - 5742530-5743705 27 7.1
11_04_0139 - 13938923-13939352,13939580-13939720,13939754-13939779 27 9.3
09_06_0020 - 20267190-20267612,20269086-20269495,20269573-202697... 27 9.3
03_01_0216 - 1700223-1700666,1700749-1700860,1701534-1701837,170... 27 9.3
02_05_1264 + 35321972-35322448,35323022-35323252,35323903-353245... 27 9.3
02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-75... 27 9.3
>07_03_1591 + 27967065-27967090,27967236-27968054,27984940-27985022,
27985590-27985744,27985956-27986461,27986551-27986703,
27987146-27987485,27987558-27987822,27987897-27988634,
27989734-27989779,27989849-27990223,27991511-27991567,
27991640-27992438
Length = 1453
Score = 31.5 bits (68), Expect = 0.43
Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 6/111 (5%)
Frame = -3
Query: 399 DNHGLRDNGIDTGSGDNRGRASLVDVQNDLHERSAVSNGGKRRVVYDSGPTEIGTYSSTM 220
+N G R G GSG GR +N + E + GG+ + + G +G
Sbjct: 981 NNKGKRKRGRPRGSGVGGGRGRKAVRRNLIDEWAEGPVGGECSMRSEEGWLGVGGGVGVG 1040
Query: 219 AGPTEIGSNS-----LTMAGPTEMGSNSSMMAGPTAIGT-KSSMMGAGPAT 85
G IG S L ++G S+S +AG A+ T +S +G G AT
Sbjct: 1041 VGGGVIGQKSTSPANLVVSGFFSAASDSQRLAGKVAVITGGASGIGKGTAT 1091
>02_02_0294 - 8651289-8651395,8651527-8651776
Length = 118
Score = 31.5 bits (68), Expect = 0.43
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 71 LVSPGVA-GPAPIIDDFVPIAVGPAIIDEFEPISVGP 178
L SP +A G PI+D P GPA+ E PIS P
Sbjct: 36 LASPAMARGDRPILDFVPPRLDGPALCSEIPPISAHP 72
>01_06_1795 -
39925019-39926029,39926265-39926408,39927200-39927277,
39927722-39927838,39927925-39927981,39928492-39928623,
39928725-39928922,39929364-39929474,39929570-39929785,
39929879-39930064,39930590-39931192
Length = 950
Score = 30.7 bits (66), Expect = 0.76
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 74 VSPGVAGPAPIIDDFVPIAVGPAIIDEFEPISVGPAIVNEFEPIS--VGPA 220
V+ A P P + +P A P ++D EP+S P + + F + +GPA
Sbjct: 816 VATANATPQPAKEQVIPSAPPPDLLDLGEPVSSSPPLADPFTQLEGLLGPA 866
>07_03_1065 + 23711677-23711837,23711859-23712180,23713071-23713277
Length = 229
Score = 30.3 bits (65), Expect = 1.0
Identities = 26/96 (27%), Positives = 35/96 (36%), Gaps = 1/96 (1%)
Frame = -3
Query: 339 ASLVDVQNDLHERSAVSNGGKRRVVYDSGPTEIGTYSSTMAGPTEIGSNSLTMAGPTEMG 160
ASLV +D+ +GG+ RVV G G + +G S AG G
Sbjct: 50 ASLVSSTSDVRHSVGGGDGGRGRVVVVPGEGSGGNGGNGGSGGKAGSGGSGGRAGSAGSG 109
Query: 159 SNSSMMAGPTAIGTKSSMMGAGPATPGLTRPL-VGP 55
N A G + A + RP+ VGP
Sbjct: 110 GNGGRPGNSEATGAADEAVAAPSISCSPARPVHVGP 145
>04_01_0460 + 5954548-5954816,5954940-5954997
Length = 108
Score = 30.3 bits (65), Expect = 1.0
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -3
Query: 510 RDHWLGSNGSNVSNLDRLGDG-AIDNNHGLSNDFGFVNDNHGLRDNGIDTGSGD 352
+D+ GS + + +G G ++DN+H + D NHG D G TG+GD
Sbjct: 36 QDNTGGSTSAKHTLPQAVGSGTSVDNHHAIPRD---QYSNHGGDDGGGSTGTGD 86
>01_05_0195 - 19111983-19112477,19112646-19113950,19114053-19114322,
19118884-19118950,19119229-19119284,19119530-19119590,
19120181-19120297,19120570-19120682,19120774-19120848,
19121464-19122045,19122056-19122271,19122372-19122497,
19126152-19126190,19126266-19126360,19126423-19126962,
19127102-19127327,19127385-19127437,19127534-19127701,
19128353-19128707,19128785-19128876,19129891-19129993
Length = 1717
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 384 RDNGIDTGSGDNRGRASLVDVQNDLHERSAVSN 286
R G G G RGR++L + D HE SA+S+
Sbjct: 1038 RGGGGRRGRGRGRGRSALAENDMDFHETSALSS 1070
>11_03_0031 -
9094643-9095824,9095945-9096034,9096141-9096216,
9096759-9096976,9097283-9097512,9097617-9097683,
9097863-9098048,9098164-9098295,9098380-9098492,
9098771-9098777
Length = 766
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 131 VGPAIIDEFEP-ISVGPAIVNEFEPISVGPAIVDEYVPISVG 253
+G IDE+ I PA+ F+P+ V VDE + I G
Sbjct: 247 IGATTIDEYRKHIEKDPALERRFQPVKVPEPTVDETIGILKG 288
>10_01_0020 + 239026-239514
Length = 162
Score = 29.1 bits (62), Expect = 2.3
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 169 RRTCHCQRIRTYLRWACHR 225
R +CHCQR++ LRW C +
Sbjct: 90 RSSCHCQRVK--LRWFCEK 106
>07_01_0975 + 8223269-8224354
Length = 361
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -3
Query: 258 SGPTEIGTYSSTMAGPTEIGSNSLTMAGPTEMGSNSSMMAGPTAIGT 118
SGP+ G S GP+ G+ S GP+ G+ + GP++ G+
Sbjct: 287 SGPSSYGAASGPAEGPSSSGAASGPAEGPSPSGA-AGPAEGPSSYGS 332
Score = 27.5 bits (58), Expect = 7.1
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = -3
Query: 255 GPTEIGTYSSTMAGPTEIGSNSLTMAGPTEMGSNSSMMAGPTAIGTKSSMMGAGPATPGL 76
GPT G S GP+ G+ S GP+ G+ S GP+ G GP++ G
Sbjct: 279 GPTAGGPAS----GPSSYGAASGPAEGPSSSGAASGPAEGPSPSGAAGP--AEGPSSYGS 332
Query: 75 T 73
T
Sbjct: 333 T 333
>07_01_0032 + 258788-259201,259297-259462,260938-261443
Length = 361
Score = 28.7 bits (61), Expect = 3.1
Identities = 22/79 (27%), Positives = 35/79 (44%)
Frame = -3
Query: 318 NDLHERSAVSNGGKRRVVYDSGPTEIGTYSSTMAGPTEIGSNSLTMAGPTEMGSNSSMMA 139
NDL A N + + SG IG + A T + SNS + GPT + ++ +
Sbjct: 173 NDLLTIFAKFNFTAKDLAVLSGAHTIGK-AHCSAFSTRLYSNSSSNGGPTLDANYTTALR 231
Query: 138 GPTAIGTKSSMMGAGPATP 82
G +G +++ P TP
Sbjct: 232 GQCKVGDVDTLVDLDPPTP 250
>03_06_0452 - 34028791-34028818,34028977-34029020,34029457-34030017
Length = 210
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = -2
Query: 196 EFVDNGRSDGNGLELIYDGRSDSDRYKVVDDGSRSGNAGTYQALSRAGDSN 44
+FV G G G ++ G SDSD + +R AGT L+ G SN
Sbjct: 158 DFVIGGNYYG-GACTVFAGNSDSDADAAIAQITRPNLAGTLVGLTSTGSSN 207
>04_03_0784 -
19610370-19611548,19611830-19611919,19612001-19612076,
19612917-19613134,19613333-19613548,19613974-19614159,
19614242-19614364,19614456-19614571,19615126-19615588
Length = 888
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 131 VGPAIIDEFEP-ISVGPAIVNEFEPISVGPAIVDEYVPISVG 253
+G +DE+ I PA+ F+P+ V VDE + I G
Sbjct: 370 IGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILRG 411
>03_05_0346 +
23335753-23335854,23336268-23336473,23336530-23336705,
23336832-23337064,23337546-23337963,23338045-23338262,
23338905-23339168
Length = 538
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/69 (24%), Positives = 30/69 (43%)
Frame = -3
Query: 360 SGDNRGRASLVDVQNDLHERSAVSNGGKRRVVYDSGPTEIGTYSSTMAGPTEIGSNSLTM 181
SG A +DV + H+ + S+GG+R +SG + ++ +A G + T
Sbjct: 106 SGVQERNADPIDVSSSTHDDTVQSSGGERFARSESGSDSQHSKTAKLAATCSSGGSECTG 165
Query: 180 AGPTEMGSN 154
E S+
Sbjct: 166 EEAKESSSS 174
>03_01_0246 - 1918935-1919689,1919771-1919819,1919894-1920049
Length = 319
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -2
Query: 187 DNGRSDGNGLELIYDGRSDSDRYKVVDDGSRSGNAGTYQALSRAGDSNGHHGSEGQEE 14
DNG +GNG G S+ +V + S+ AG + A +NG+ + +EE
Sbjct: 134 DNGNGNGNGY-----GNSNGREVQVANASSKRVVAGATDGKTAASGANGNKQQQKEEE 186
>01_06_0644 +
30821811-30821855,30822707-30822976,30823079-30824383,
30824551-30824692,30824752-30825275
Length = 761
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 384 RDNGIDTGSGDNRGRASLVDVQNDLHERSAVSN 286
R G G G RGR++L + D HE SA S+
Sbjct: 25 RGGGGRRGRGRGRGRSALAENDMDFHETSAPSS 57
>12_01_0777 - 7095081-7096259,7096636-7096725,7096827-7096902,
7097150-7097367,7097502-7097717,7097922-7098107,
7098181-7098303,7098399-7098514,7099254-7099832,
7101485-7101517,7102485-7103679,7103732-7103797,
7104843-7104905,7105328-7105411
Length = 1407
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 131 VGPAIIDEFEP-ISVGPAIVNEFEPISVGPAIVDEYVPISVG 253
+G +DE+ I PA+ F+P+ V VDE + I G
Sbjct: 889 IGATTLDEYRKHIEKDPALERRFQPVRVPEPTVDETIEILRG 930
>10_08_0439 - 17926021-17927133
Length = 370
Score = 27.9 bits (59), Expect = 5.3
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = -3
Query: 249 TEIGTYSSTMAGPTEIGSNSLTMAGPTEMGSNSSMMAGPTAIGTKSSMMG----AGPATP 82
T ++ A PT+ S+S + +++ + + M GP + T M G AG ATP
Sbjct: 72 TSASAAAAAAASPTQSSSSSAATSPSSDLSAFLNSMLGPLNLRTDERMPGTTSAAGTATP 131
>09_02_0564 + 10698710-10699294
Length = 194
Score = 27.9 bits (59), Expect = 5.3
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Frame = -2
Query: 244 DRYVLVDDGRPNG-DRFEFVDNGRSDGNGLELIYDGRSDS-DRYKVVDD------GSRSG 89
D V V R +G D V G +G G E++ GR D DR VV + GS +G
Sbjct: 90 DALVGVGGDRGSGADEVVVVGGGAGEG-GDEVVVGGRGDEEDRVVVVGEERGEKLGSDNG 148
Query: 88 NA-GTYQAL--SRAGDSNGHHGSEGQEE 14
G + + S G+ NG G E +EE
Sbjct: 149 CVEGIREGIADSDRGEGNGEEGKEKEEE 176
>04_01_0229 - 2897484-2900402
Length = 972
Score = 27.9 bits (59), Expect = 5.3
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Frame = -3
Query: 516 ESRDHWLGSNGSNVSNLDRLGDGAIDNNHGLSNDF-------GF-VNDNHGLRDNGIDTG 361
+S DH G+ N G+G N LSN+F GF +NDN + GI +G
Sbjct: 509 KSSDHVEGNESDLNDNSSGHGEGIGSGNKHLSNNFLNHVEGIGFDLNDNSSDHEEGIGSG 568
Query: 360 SGD 352
D
Sbjct: 569 KKD 571
>01_06_0832 +
32291454-32291537,32291584-32291661,32292081-32292804,
32294259-32294446,32294623-32294682,32295516-32295959
Length = 525
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -2
Query: 172 DGNGL---ELIYDGRSDSDRYKVVDDGSRSGNAGTY 74
DGNG+ +L+Y + ++ VV +G R+G G Y
Sbjct: 10 DGNGINKTKLVYSSQHPAEDLLVVVNGKRAGTTGMY 45
>10_08_0769 + 20452130-20453314
Length = 394
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 109 DDGSRSGNAGTYQALSRAGDSNGHHGSE 26
D + SGN YQA + AGD+ G G++
Sbjct: 117 DSRNCSGNVCAYQASTNAGDTGGKVGTD 144
>08_02_1280 +
25846557-25846871,25847278-25847349,25847441-25847599,
25847971-25848099,25848194-25848310,25848434-25848535,
25848759-25848917,25849090-25849464
Length = 475
Score = 27.5 bits (58), Expect = 7.1
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +1
Query: 217 CHRRRVRTYLRWTAIVDNPPLAPVADSTPLVQIILNINQASSAPIVPGP 363
C RRRV +RW + + P AP A++ P+V + N A PGP
Sbjct: 3 CRRRRVGAAVRWLSRL--APPAP-AEADPVVVRVDGSNVARLGKPKPGP 48
>06_01_0184 + 1433798-1434442
Length = 214
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = -2
Query: 196 EFVDNGRSDGNGLELIYDGRSDSDRYKVVDDGSRSGNAGTYQALSRAGDSNGHHGSEG 23
++ D+ + + + Y G D D+ DG G G YQ+ GD +G G G
Sbjct: 150 QYQDDMAATPSSYDYAYYGNMDFDQPSYYYDGM--GGGGEYQSWQMDGDDDGGAGGYG 205
>03_05_0737 +
27258320-27259007,27259263-27259435,27262684-27262758,
27262832-27263296
Length = 466
Score = 27.5 bits (58), Expect = 7.1
Identities = 18/59 (30%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Frame = -2
Query: 184 NGRSDGNGLELIYD--GRSDSDRYKVVDDGSRSGNAGTYQALSRAGDSNGHHGSEGQEE 14
NGR G G Y+ G Y G RSG +Y G G H G+ E
Sbjct: 403 NGRGGGEGGGYYYNEPGYYQQRGYSNRGRGGRSGGGNSYYNNQGGGSQGGGHAHPGRVE 461
>03_02_0122 - 5742530-5743705
Length = 391
Score = 27.5 bits (58), Expect = 7.1
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Frame = -2
Query: 181 GRSDGNGLELIYDGRSDSDRYKVVDDGSRSGNAGTYQALSRAGDSNGHHGSE-GQEE 14
G S G G + GR + D YK G G Y+ +GH G G+EE
Sbjct: 282 GASSGGG----HGGRYEEDDYKKKPSAHSGGGGGRYEEEEGYKKPSGHGGGRYGKEE 334
>11_04_0139 - 13938923-13939352,13939580-13939720,13939754-13939779
Length = 198
Score = 27.1 bits (57), Expect = 9.3
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -3
Query: 231 SSTMAGPTEIGSNSLTMAGPTEMGSNSSMMAGPTAIGTKSSMMGAGPATPGLTRPLVG 58
+S+M G +GS A P + +S +G TA+ + +S + A+ GL + G
Sbjct: 110 ASSMGGAAMLGSGKTATASPAGGSNTASQGSGKTAVASHAS--ESSTASQGLQKTAGG 165
>09_06_0020 -
20267190-20267612,20269086-20269495,20269573-20269747,
20270833-20271066,20271164-20271265,20271354-20272091,
20272204-20272321,20272417-20272667,20272768-20272932
Length = 871
Score = 27.1 bits (57), Expect = 9.3
Identities = 19/69 (27%), Positives = 36/69 (52%)
Frame = -3
Query: 300 SAVSNGGKRRVVYDSGPTEIGTYSSTMAGPTEIGSNSLTMAGPTEMGSNSSMMAGPTAIG 121
S++S+ G + SG E+G S+ G +G+++ + P MG +S + GP +G
Sbjct: 258 SSISSPGPPSLQACSG-LELGVGSNGGFGLGALGASAAMQSIPDLMGGSSGLTGGP--VG 314
Query: 120 TKSSMMGAG 94
+ + + AG
Sbjct: 315 SAAMRLPAG 323
>03_01_0216 -
1700223-1700666,1700749-1700860,1701534-1701837,
1702358-1702426,1702543-1702657,1702740-1702811,
1702918-1703016,1703148-1703219,1703394-1703465,
1704940-1705154,1705277-1705495,1705792-1707076,
1707270-1707398
Length = 1068
Score = 27.1 bits (57), Expect = 9.3
Identities = 35/139 (25%), Positives = 54/139 (38%), Gaps = 3/139 (2%)
Frame = -3
Query: 501 WLGSNGSNVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGLRDNGIDTGSGDNRGRASLVDV 322
W G N +V L + GA FG + G+ G S +
Sbjct: 254 WRGGNVGSVGGLPQATPGATAPQQATPGGFGLTLSS----TMGMAPGQQAQGTPPSSMPP 309
Query: 321 QNDLHERSAVS-NGGKRRVVYDSGPTE-IGTYSSTMAGPTEIGSNSLTMAGPTEMGSN-S 151
Q++ SAVS K V+ +G +G + + T+ SN T++ PT M N S
Sbjct: 310 QSN----SAVSAQDSKALVLSGNGSASGLGASNDIFSALTQPKSNVSTLSFPTSMAPNSS 365
Query: 150 SMMAGPTAIGTKSSMMGAG 94
S M+ P+ S++ G
Sbjct: 366 SFMSTPSGSQNLSNLAQFG 384
>02_05_1264 +
35321972-35322448,35323022-35323252,35323903-35324565,
35324698-35324806,35324965-35325383
Length = 632
Score = 27.1 bits (57), Expect = 9.3
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +2
Query: 68 GLVSPGVAGPAPIIDDFVPIAVGPAIIDEFEPISVGPAIVNEFEPISVGPAIV 226
G + P A P +DD V + G + I PA+ +EF P S G ++V
Sbjct: 484 GNMYPDTAVPDMPMDDTVDKSFGKRLASMLGSIPAPPAMASEFPP-STGKSVV 535
>02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-751889,
752025-753905,754093-754296,754807-754899,755036-755122,
755241-755328,755533-755645,755943-757259,757398-758672,
759166-759273
Length = 2233
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2
Query: 232 LVDDGRPNGDRFEFVDNGRSDGNGLEL 152
+VD RPN D F F+ + R+ G GL L
Sbjct: 1352 IVDFNRPNSDCFIFLLSIRAAGRGLNL 1378
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,442,035
Number of Sequences: 37544
Number of extensions: 285178
Number of successful extensions: 1272
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1266
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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