Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0524
         (527 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          27   0.12 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    27   0.16 
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    24   1.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   1.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.6  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   5.9  
DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    21   7.8  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    21   7.8  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    21   7.8  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    21   7.8  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    21   7.8  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    21   7.8  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    21   7.8  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    21   7.8  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    21   7.8  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    21   7.8  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = -3

Query: 492 SNGSNVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGLRDNGIDTGSGDNRGRASL 331
           SN S ++  +   + + +NN+  +N+    N+N+G  DNG   G+ +N     +
Sbjct: 223 SNNSTITAGNANTNASNNNNNNNNNN----NNNNGANDNGNGNGASNNNNNGDM 272


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 26.6 bits (56), Expect = 0.16
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = -3

Query: 483 SNVSNLDRLGDGAIDNNHGLSNDFGF---VNDNHGLRDNGIDTGSGDN 349
           S++   D+L D  I     LS D      VN +HG++ +G  +  GD+
Sbjct: 664 SSIKASDKLKDSRIKTTEKLSTDPNTHFQVNQSHGIKRSGSHSWEGDS 711


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 444 IDNNHGLSNDFGFVNDNHGLRDNGIDT 364
           I NN+ LSN++ + N+N+   +N  +T
Sbjct: 82  ISNNNSLSNNYNY-NNNYNNYNNNYNT 107


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 133 RTCHHR*VRAHFRRTCHCQR 192
           R  HH    AH RRT H  R
Sbjct: 149 RCLHHDIENAHIRRTLHMNR 168


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -3

Query: 180 AGPTEMGSNSSMMA-GPTAIGTKSSMMGAGPATP 82
           AG T+  + +++   G T     +S  G GPATP
Sbjct: 208 AGSTDASTPATVTTTGATTTLPAASATGTGPATP 241



 Score = 21.0 bits (42), Expect = 7.8
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 265 DNPPLAPVADST 300
           D PPL+P +DS+
Sbjct: 439 DQPPLSPQSDSS 450


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 153 SSMMAGPTAIGTKSSMM 103
           +S +AG  AIGT + MM
Sbjct: 275 NSTLAGGVAIGTAAGMM 291


>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 444 IDNNHGLSNDFGFVND 397
           I NN+ LSN++ + N+
Sbjct: 82  ISNNNSLSNNYNYNNN 97


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 444 IDNNHGLSNDFGFVND 397
           I NN+ LSN++ + N+
Sbjct: 82  ISNNNSLSNNYNYNNN 97


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 444 IDNNHGLSNDFGFVND 397
           I NN+ LSN++ + N+
Sbjct: 82  ISNNNSLSNNYNYNNN 97


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 444 IDNNHGLSNDFGFVND 397
           I NN+ LSN++ + N+
Sbjct: 82  ISNNNSLSNNYNYNNN 97


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 444 IDNNHGLSNDFGFVND 397
           I NN+ LSN++ + N+
Sbjct: 82  ISNNNSLSNNYNYNNN 97


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 444 IDNNHGLSNDFGFVND 397
           I NN+ LSN++ + N+
Sbjct: 82  ISNNNSLSNNYNYNNN 97


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 444 IDNNHGLSNDFGFVND 397
           I NN+ LSN++ + N+
Sbjct: 82  ISNNNSLSNNYNYNNN 97


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 444 IDNNHGLSNDFGFVND 397
           I NN+ LSN++ + N+
Sbjct: 82  ISNNNSLSNNYNYNNN 97


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 444 IDNNHGLSNDFGFVND 397
           I NN+ LSN++ + N+
Sbjct: 315 ISNNNSLSNNYNYNNN 330


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 444 IDNNHGLSNDFGFVND 397
           I NN+ LSN++ + N+
Sbjct: 315 ISNNNSLSNNYNYNNN 330


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,386
Number of Sequences: 438
Number of extensions: 2634
Number of successful extensions: 20
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)