Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0524
         (527 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18810.1 68416.m02389 protein kinase family protein contains ...    33   0.16 
At1g70740.1 68414.m08154 protein kinase family protein contains ...    31   0.36 
At5g62940.1 68418.m07897 Dof-type zinc finger domain-containing ...    30   0.84 
At4g34300.1 68417.m04875 glycine-rich protein similar to auxin r...    30   1.1  
At3g43920.1 68416.m04701 ribonuclease III family protein similar...    29   1.5  
At2g28670.1 68415.m03485 disease resistance-responsive family pr...    29   1.9  
At5g50920.1 68418.m06315 ATP-dependent Clp protease ATP-binding ...    29   2.6  
At3g50690.1 68416.m05546 leucine-rich repeat family protein            28   4.5  
At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding ...    28   4.5  
At4g37130.1 68417.m05258 hydroxyproline-rich glycoprotein family...    27   5.9  
At3g29080.1 68416.m03641 hypothetical protein                          27   5.9  
At2g27660.1 68415.m03352 DC1 domain-containing protein contains ...    27   7.8  
At1g02610.1 68414.m00211 zinc finger (C3HC4-type RING finger) fa...    27   7.8  

>At3g18810.1 68416.m02389 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 700

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -3

Query: 489 NGSNVSNLDRLGDGAIDNNHGLSNDFGFV-NDNHGLRDNGIDTGSGDNRGRASLVDVQND 313
           N +N +N +  G+   DNN+G + D     N+N+G  +NG D    +N G  +  + QN+
Sbjct: 79  NNNNDNNNNNNGNNNNDNNNGNNKDNNNNGNNNNGNNNNGNDNNGNNNNGNNNDNNNQNN 138


>At1g70740.1 68414.m08154 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 425

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -3

Query: 279 KRRVVYDSGPTEIGTYSSTMAGPTEIGSNSLTMAGPTEMGSNSSMMAGPTAIGTKSS 109
           +RR    SG   +GT S+T +     GSN  T  G    G+ +S  A   +  T+S+
Sbjct: 353 RRRTQRPSGAASLGTLSTTGSSTDSFGSNLNTNTGTGVRGTPASSKASTRSNATRSA 409


>At5g62940.1 68418.m07897 Dof-type zinc finger domain-containing
           protein Dof zinc finger protein, Oryza sativa,
           EMBL:AB028129
          Length = 372

 Score = 30.3 bits (65), Expect = 0.84
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
 Frame = -3

Query: 516 ESRDHWLGSNGSNVS--NLDRLGDGAIDNNH--GLSNDFGFVNDNHGLRDNGIDTGSGDN 349
           +S+   +G N  N+   N    GD    +NH  GL++  G  N+N+    NGI TG   N
Sbjct: 211 DSKFDLMGVNNDNLVMVNHGSNGDHHHHHNHHMGLNHGVGLNNNNNNGGFNGISTGGNGN 270

Query: 348 RGRASLVDV 322
            G   L+D+
Sbjct: 271 GG--GLMDI 277


>At4g34300.1 68417.m04875 glycine-rich protein similar to auxin
           response factor 30 (GI:20145855) {Arabidopsis thaliana}
          Length = 313

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 35/121 (28%), Positives = 48/121 (39%), Gaps = 5/121 (4%)
 Frame = -3

Query: 453 DGAIDNNHGLSNDFGFVNDNH-GLRDNGIDTGSGDNRGRASLVDVQNDLHERSAVSNGGK 277
           DG  D N G  +  G  + +  G   NG  +GS  + G  S  +  +     S  S+ G 
Sbjct: 73  DGT-DTNWGWGSSSGSNHSSGTGSTHNGHSSGSNHSSGTGSTHNGHSSGSNHS--SSTGS 129

Query: 276 RRVVYDSGPTEIGTYSSTMAGPTEIGSNSLTMAGPT----EMGSNSSMMAGPTAIGTKSS 109
               + SG        ST       GSN  ++AGPT      GSN S + G T   T  S
Sbjct: 130 THNNHSSGSNHSSIVGSTHKNHGS-GSNHSSIAGPTHNGHSSGSNHSSIIGSTHNHTAPS 188

Query: 108 M 106
           +
Sbjct: 189 L 189


>At3g43920.1 68416.m04701 ribonuclease III family protein similar to
            RNA helicase/RNAseIII CAF protein [Arabidopsis thaliana]
            GI:6102610; contains Pfam profiles PF02170: PAZ domain,
            PF00636: RNase3 domain
          Length = 1531

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 18/65 (27%), Positives = 27/65 (41%)
 Frame = -3

Query: 249  TEIGTYSSTMAGPTEIGSNSLTMAGPTEMGSNSSMMAGPTAIGTKSSMMGAGPATPGLTR 70
            T+I  Y  +   P E G +  ++ GP  +G     +AG   I T+  +         L  
Sbjct: 1247 TQINDYLMSFQKPDETGRSIPSIQGPKALGDVVESIAGALLIDTRLDLDQVWRVFEPLLS 1306

Query: 69   PLVGP 55
            PLV P
Sbjct: 1307 PLVTP 1311


>At2g28670.1 68415.m03485 disease resistance-responsive family
           protein / fibroin-related contains similarity to silk
           fibroin heavy chain [Bombyx mori] gi|765323|gb|AAB31861;
           contains disease resistance response protien domain
           Pfam:FP03018
          Length = 447

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
 Frame = -3

Query: 258 SGPTEIGTYSSTMAGPTEIGSNSLTMAGPTE---MGSNSSMMAGPTAIGTKSSMMGAGPA 88
           SGP  + T SS        GS SL   G       G+ S++  GP A        GAGPA
Sbjct: 93  SGPGLLPTASSVPGSLAGGGSGSLPTTGSATGAGAGTGSALGGGPGAGSALGGGAGAGPA 152

Query: 87  TPG 79
             G
Sbjct: 153 LGG 155


>At5g50920.1 68418.m06315 ATP-dependent Clp protease ATP-binding
           subunit / ClpC almost identical to ClpC GI:2921158 from
           [Arabidopsis thaliana]; contains Pfam profile PF02861:
           Clp amino terminal domain; contains Pfam profile
           PF00004: ATPase, AAA family; contains Pfam profile
           PF02151: UvrB/uvrC motif
          Length = 929

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 131 VGPAIIDEFEP-ISVGPAIVNEFEPISVGPAIVDEYVPISVG 253
           +G   +DE+   I   PA+   F+P+ V    VDE + I  G
Sbjct: 406 IGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKG 447


>At3g50690.1 68416.m05546 leucine-rich repeat family protein 
          Length = 447

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/59 (20%), Positives = 29/59 (49%)
 Frame = -2

Query: 190 VDNGRSDGNGLELIYDGRSDSDRYKVVDDGSRSGNAGTYQALSRAGDSNGHHGSEGQEE 14
           +++  ++ +G++   D   D +  +V +     G +G+   L  AG+ +GH   +  E+
Sbjct: 283 IEDSENEEDGVDDEEDDEEDEEEEEVDNADRGLGGSGSTSRLMNAGEIDGHEQGDDDED 341


>At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding
           subunit (ClpC) identical to AtClpC GI:5360574 from
           [Arabidopsis thaliana]; contains Pfam profiles  PF02861:
            Clp amino terminal domain and PF02151:  UvrB/uvrC motif
          Length = 952

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 131 VGPAIIDEFEP-ISVGPAIVNEFEPISVGPAIVDEYVPISVG 253
           +G   IDE+   I   PA+   F+P+ V    V+E + I  G
Sbjct: 427 IGATTIDEYRKHIEKDPALERRFQPVKVPEPTVEEAIQILQG 468


>At4g37130.1 68417.m05258 hydroxyproline-rich glycoprotein family
           protein
          Length = 513

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 201 GSNSLTMAGPTEMGSNSSMMAGPTAIGTKSSMMGAGPA-TPGLTRPLVG 58
           G +S   A P+     SS+  GP+   T++ + G+ PA T G T+ L G
Sbjct: 427 GPSSSLFATPSSTAPTSSLF-GPSPTPTQTPLFGSSPASTFGSTQSLFG 474


>At3g29080.1 68416.m03641 hypothetical protein
          Length = 445

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 258 SGPTEIGTYSSTMAGPTEIGSNSLTMAGPTEMGSNS 151
           SG TEIG  +  ++    +GS + T   PT  GS +
Sbjct: 323 SGQTEIGVSTRCISTSVVVGSEATTNTEPTTTGSRT 358


>At2g27660.1 68415.m03352 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 718

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = -2

Query: 235 VLVDDGRPNGDRFEFVDNGRS-DGNGLELIYDGRSDSDRYKVVDDGSRSGNAGTYQALSR 59
           V V++    G+  +  D G   DGNGLE++    + S  Y   D GS S        LS 
Sbjct: 312 VYVEEANDEGEDVDGNDEGEDVDGNGLEIVACVDNLSVAYSESDFGSSSDARSQCNDLSD 371

Query: 58  A 56
           A
Sbjct: 372 A 372


>At1g02610.1 68414.m00211 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 146

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = +1

Query: 127 RCRTCHHR*VRAHFRRTCHCQRIRTYLRWACHRR 228
           RCR CH     ++F   C C     +    C +R
Sbjct: 19  RCRICHEEEAESYFEAPCSCSGTIKFAHRDCIQR 52


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,235,957
Number of Sequences: 28952
Number of extensions: 199940
Number of successful extensions: 884
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)