Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0523
(690 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa... 31 0.21
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces... 29 0.63
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 29 0.63
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch... 27 1.9
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 27 2.6
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 27 3.4
SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch... 26 4.5
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 26 4.5
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 26 4.5
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar... 26 5.9
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|... 25 7.8
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 25 7.8
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 25 7.8
SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyce... 25 7.8
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|... 25 7.8
>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 30.7 bits (66), Expect = 0.21
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +2
Query: 11 MNLLFVLLCLSTIAVRNVRGKSKVRYFPDYFEFGASTASYQVEGAWDEDGK 163
MN+L+ L+ + + AV +VR +R+F E ++ + GAW ++ +
Sbjct: 103 MNILWGLMTIFSFAVHSVRALMILRFFMAVAEASTFAGTHYILGAWYKESE 153
>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 289
Score = 29.1 bits (62), Expect = 0.63
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 276 HEGAWSELLSFLRILVEDFAKR 341
H+ WS ++ +LR VE+FAK+
Sbjct: 182 HQQGWSNMMLYLRYQVEEFAKK 203
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 29.1 bits (62), Expect = 0.63
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = +1
Query: 271 EIMKELGLNFYRFSVSWSRILPSGFANQINQAGIDYYNNLINEMLANNIKP 423
E ++E LN+ ++ R+L F+N+ N + +D Y+NLI +L+ N P
Sbjct: 677 EDLREACLNYL---INIKRLLLCPFSNR-NFSSLDLYSNLIQHLLSANSSP 723
>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 23 FVLLCLSTIAVRNVRGKSKVRYFPDYFEF 109
F +LCL+TI ++RG FP+ +F
Sbjct: 8 FQVLCLATIGFHHLRGPEIEHLFPESMDF 36
>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 473
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = -2
Query: 155 PHPTLLLPDKKPLMRRIRNSQGSNAPCSCRGHFVP 51
P ++ +P KP+ + N+ S +P + G+F+P
Sbjct: 349 PPSSIQIPPPKPMQKFPANAASSESPPNATGNFLP 383
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 26.6 bits (56), Expect = 3.4
Identities = 19/80 (23%), Positives = 32/80 (40%)
Frame = -1
Query: 516 RSLKPIYDHRVGPAPQILEALGQIPMVNRQEWFNVVRQHFVD*IIVIIYAGLVDLIGETA 337
RSL P Y A + + VN ++W VR D +I+++ DL +
Sbjct: 74 RSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVGNKTDLADK-- 131
Query: 336 WQNPRPRYGETIEVQTKLLH 277
+ GE + K++H
Sbjct: 132 -RQVTQEEGEKKAKELKIMH 150
>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 445
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -1
Query: 309 ETIEVQTKLLHDFH-VPFVQWYESAATSPVLPSL 211
E ++QTKLLH H PF + E+ PSL
Sbjct: 328 ELAQIQTKLLHGAHQAPFGFYSEAPQQGDSFPSL 361
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 66 AARARCVTSLTISNSAH 116
A R RCVTSL + NS H
Sbjct: 1788 ALRTRCVTSLMLVNSKH 1804
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 83 RYFPDYFEFGASTASYQVEGAWDEDGKSLSIWD 181
RYFPDY++ Y++ + GK LS+ D
Sbjct: 44 RYFPDYYQIIQKPICYKMMRNKAKTGKYLSMGD 76
>SPBC19F5.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 5.9
Identities = 20/60 (33%), Positives = 25/60 (41%)
Frame = +1
Query: 286 LGLNFYRFSVSWSRILPSGFANQINQAGIDYYNNLINEMLANNIKPFLTIYHWDLPQSFQ 465
LG YR V ++P +Q +D YN L N + PF Y WDL S Q
Sbjct: 74 LGHKIYR--VHKFEVIPYRNLLADDQDELDLYNLLQNHLKTG---PFYFSYTWDLTNSLQ 128
>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 7.8
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -2
Query: 164 SFHPHPTLLLPDKKPLMRRIRNSQGSNAPCSCRGHF-VPLSLKDTTTQTTNSLP 6
SF P ++LPD L + SNA C+ GH + L L D + + +S P
Sbjct: 438 SFRP---IILPDSMTLRIVVPLDARSNAWCAFDGHHRIELGLGDYISISASSFP 488
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -2
Query: 563 DPKFHPISKILEQ 525
DP+FHPI +ILE+
Sbjct: 749 DPQFHPIREILEK 761
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +2
Query: 554 ILDLYK*AQTNLHRSYGTDKKAPMVNMSGIADYMCNKN 667
+ D++ + NL T K +N+SG++ CN N
Sbjct: 802 VSDVFTLPRNNLKSKTNTKKCRDNLNLSGLSSSTCNAN 839
>SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 456
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 259 KRDVEIMKELGLNFYRFSVSWSRILPSGFANQINQAGI 372
K+DVEI K+LG+N R + N +++AGI
Sbjct: 69 KKDVEIFKKLGINTVRVYQVDNSADHDKCMNALSEAGI 106
>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 397
Score = 25.4 bits (53), Expect = 7.8
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = -1
Query: 336 WQNPRPRYGETIEVQTKLLHDFHVPFVQWYESAATSPVLPSLIGDG--DM*AATSH 175
W N YG + L + F+ WY+ + +L + +GD D+ AA+SH
Sbjct: 285 WNNTGT-YGSILSYIIYWLFVAFIMFLMWYKERRAARLLIAKLGDKVVDLEAASSH 339
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,178,919
Number of Sequences: 5004
Number of extensions: 72851
Number of successful extensions: 203
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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