Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0523
(690 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26096| Best HMM Match : Glyco_hydro_1 (HMM E-Value=5.3e-19) 118 6e-27
SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.) 113 1e-25
SB_28167| Best HMM Match : Cellulase (HMM E-Value=0.4) 29 4.7
SB_38771| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_47365| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_26950| Best HMM Match : TBC (HMM E-Value=5.2e-28) 28 8.2
SB_23653| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
>SB_26096| Best HMM Match : Glyco_hydro_1 (HMM E-Value=5.3e-19)
Length = 204
Score = 118 bits (283), Expect = 6e-27
Identities = 43/91 (47%), Positives = 70/91 (76%)
Frame = +1
Query: 265 DVEIMKELGLNFYRFSVSWSRILPSGFANQINQAGIDYYNNLINEMLANNIKPFLTIYHW 444
D++++K LG++ YRFS+SW+RILP G + +N++G++YYN +I+++LA NI+P T+YH+
Sbjct: 73 DIQLLKSLGVSHYRFSISWARILPDGLLDVVNKSGVEYYNRVIDKLLAVNIQPVATLYHF 132
Query: 445 DLPQSFQDLGGWANPMIVDWFETTLRFCSRI 537
DLPQ+ QD GGW N +++WF R C ++
Sbjct: 133 DLPQALQDKGGWLNSRVIEWFAGYARVCFKL 163
Score = 65.3 bits (152), Expect = 4e-11
Identities = 27/58 (46%), Positives = 41/58 (70%)
Frame = +2
Query: 89 FPDYFEFGASTASYQVEGAWDEDGKSLSIWDVAAHMSPSPIKDGSTGDVAADSYHCTN 262
FP+ F +G +TA++Q+EGAW+EDGK +IWD +H + + I + D+A DSYH T+
Sbjct: 15 FPESFIWGVATAAHQIEGAWNEDGKGPNIWDAFSHKTGN-IHNNENADIACDSYHKTD 71
Score = 38.7 bits (86), Expect = 0.004
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = +3
Query: 513 YAKVLFENFGDRVKFWISINEPKQ 584
YA+V F+ FGDRV+ W++INEP +
Sbjct: 156 YARVCFKLFGDRVRLWLTINEPHE 179
>SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 535
Score = 113 bits (272), Expect = 1e-25
Identities = 48/91 (52%), Positives = 60/91 (65%)
Frame = +1
Query: 256 YKRDVEIMKELGLNFYRFSVSWSRILPSGFANQINQAGIDYYNNLINEMLANNIKPFLTI 435
YK DV++++ LG+ YRFS+SW RILP G IN GI+YYNNLINE+L NI+P TI
Sbjct: 93 YKEDVQLLRNLGVKAYRFSISWPRILPKGTKEIINTKGIEYYNNLINELLHYNIQPVATI 152
Query: 436 YHWDLPQSFQDLGGWANPMIVDWFETTLRFC 528
YHWDLP F+ G W N I++ F C
Sbjct: 153 YHWDLPVPFRMAGSWTNSSIIEHFNDYAEIC 183
Score = 75.4 bits (177), Expect = 4e-14
Identities = 38/80 (47%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Frame = +2
Query: 17 LLFVLLCLSTIAVRNVRGKSKVRYFPDYFEFGASTASYQVEGAWDEDGKSLSIWDVAAHM 196
LL + LS +V VR K + FP FE+G++T++YQ+EGAWD DGK L +WD H
Sbjct: 12 LLILQPALSYKSVDPVRDKFEYGTFPADFEWGSATSAYQIEGAWDVDGKGLGLWDYLTHS 71
Query: 197 SP-SPIKDGSTGDVAADSYH 253
S + TGDVA DSYH
Sbjct: 72 HQFSHLFKNQTGDVACDSYH 91
Score = 44.4 bits (100), Expect = 9e-05
Identities = 17/23 (73%), Positives = 21/23 (91%)
Frame = +3
Query: 510 DYAKVLFENFGDRVKFWISINEP 578
DYA++ F+NFGDRVK WI+INEP
Sbjct: 178 DYAEICFKNFGDRVKKWITINEP 200
>SB_28167| Best HMM Match : Cellulase (HMM E-Value=0.4)
Length = 398
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = +1
Query: 259 KRDVEIMKELGLNFYRFSVSWSRILPSGFANQINQAGIDYYNNLINEMLANNIKPFLTIY 438
++D+E+M+ LGLN R W + P+ + N+ I+ ++ I L ++
Sbjct: 199 EQDMELMQSLGLNVLRLGYMWPGVEPT--RGKYNETYIEVIKKIVTLSAKYGIYVLLDMH 256
Query: 439 HWDLPQSF--QDLGGW-ANP 489
+ + F + W ANP
Sbjct: 257 QDVMSRKFCVEGFPNWAANP 276
>SB_38771| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 267
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +2
Query: 110 GASTASYQVEGAWDEDGKSLSIW--DVAAHMSPSPIKDGST 226
G +TAS EG WDE L++W VA+ +P + G T
Sbjct: 123 GPATAS-DPEGKWDEHKVELALWTYTVASKHAPHLLDSGKT 162
>SB_47365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 648
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = +3
Query: 540 GDRVKFWISINEPK---QICTEVMAQIKKLRWSTC 635
GD KFW+ ++ + Q C E +K +WS+C
Sbjct: 476 GDLSKFWMKCSDRECSAQKCAEGRLNMKSSKWSSC 510
>SB_26950| Best HMM Match : TBC (HMM E-Value=5.2e-28)
Length = 998
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 297 VQTKLLHDFHVPFVQWYESAATSPVL 220
V ++LLHD+H P ++ E +P L
Sbjct: 717 VLSRLLHDYHTPLYEFLEELDITPTL 742
>SB_23653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/22 (59%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
Frame = -3
Query: 589 QICLGSFI-EIQNFTLSPKFSN 527
Q+ LG+F+ ++Q FTLSPK SN
Sbjct: 173 QVRLGAFLLQLQYFTLSPKSSN 194
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,629,314
Number of Sequences: 59808
Number of extensions: 525767
Number of successful extensions: 1270
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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