Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0522
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    78   8e-16
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   8.0  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 78.2 bits (184), Expect = 8e-16
 Identities = 38/63 (60%), Positives = 48/63 (76%), Gaps = 1/63 (1%)
 Frame = +2

Query: 2   FR*LATIHGTQINYNP-NIL*RLGFVFLFTVGGLTGVILANSSIDITLHDTYYVVAHFHY 178
           F  LAT+ G  I ++   +L  +GF+ LFT+GGLTGVIL+NS +DI  HDTY+VVAHFHY
Sbjct: 327 FSWLATLTGGAIQWSRVPMLYAIGFLILFTIGGLTGVILSNSVLDIAFHDTYFVVAHFHY 386

Query: 179 VLS 187
           VLS
Sbjct: 387 VLS 389



 Score = 59.3 bits (137), Expect = 4e-10
 Identities = 25/40 (62%), Positives = 30/40 (75%)
 Frame = +1

Query: 256 NSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPD 375
           N  +  IQF+ +FIGVNI F PQHFLGL G+PRR  DYP+
Sbjct: 412 NETLASIQFWILFIGVNIVFGPQHFLGLNGMPRRIPDYPE 451


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +2

Query: 98  LTGVILANSSIDITLHDTYYVV 163
           L  ++LAN+++D T+H  Y+++
Sbjct: 657 LDHILLANATLDKTVHSAYWLM 678


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,761,721
Number of Sequences: 5004
Number of extensions: 27602
Number of successful extensions: 63
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)