Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0522
(579 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10) 93 2e-19
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 1e-11
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.018
SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.018
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.018
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.018
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.018
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.018
SB_43698| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
Length = 229
Score = 92.7 bits (220), Expect = 2e-19
Identities = 42/62 (67%), Positives = 51/62 (82%)
Frame = +2
Query: 2 FR*LATIHGTQINYNPNIL*RLGFVFLFTVGGLTGVILANSSIDITLHDTYYVVAHFHYV 181
F LAT++G I + +L +GFVFLFT+GGLTGVILANSS+D+ +HDTYYVVAHFHYV
Sbjct: 25 FSWLATLYGGAIRLDTPMLWAIGFVFLFTIGGLTGVILANSSLDVVMHDTYYVVAHFHYV 84
Query: 182 LS 187
LS
Sbjct: 85 LS 86
Score = 66.5 bits (155), Expect = 1e-11
Identities = 28/35 (80%), Positives = 31/35 (88%)
Frame = +1
Query: 271 KIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPD 375
KI F+ +FIGVNITFFPQHFLGLAG PRRYSD+ D
Sbjct: 115 KIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFAD 149
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 510 SIE*YQNLPPAEHSYNELPIL 572
S+E Q PPA H+YNELP +
Sbjct: 199 SLEWVQQSPPALHTYNELPFV 219
>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 66.5 bits (155), Expect = 1e-11
Identities = 28/35 (80%), Positives = 31/35 (88%)
Frame = +1
Query: 271 KIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPD 375
KI F+ +FIGVNITFFPQHFLGLAG PRRYSD+ D
Sbjct: 29 KIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFAD 63
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 510 SIE*YQNLPPAEHSYNELPIL 572
S+E Q PPA H+YNELP +
Sbjct: 113 SLEWVQQSPPALHTYNELPFV 133
>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 36.3 bits (80), Expect = 0.018
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +1
Query: 325 HFLGLAGIPRRYSDYPD 375
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 510 SIE*YQNLPPAEHSYNELPIL 572
S+E Q PPA H+YNELP +
Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87
>SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 36.3 bits (80), Expect = 0.018
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +1
Query: 325 HFLGLAGIPRRYSDYPD 375
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 36.3 bits (80), Expect = 0.018
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +1
Query: 325 HFLGLAGIPRRYSDYPD 375
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 510 SIE*YQNLPPAEHSYNELPIL 572
S+E Q PPA H+YNELP +
Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87
>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 36.3 bits (80), Expect = 0.018
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +1
Query: 325 HFLGLAGIPRRYSDYPD 375
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 510 SIE*YQNLPPAEHSYNELPIL 572
S+E Q PPA H+YNELP +
Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87
>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 36.3 bits (80), Expect = 0.018
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +1
Query: 325 HFLGLAGIPRRYSDYPD 375
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 510 SIE*YQNLPPAEHSYNELPIL 572
S+E Q PPA H+YNELP +
Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87
>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 36.3 bits (80), Expect = 0.018
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +1
Query: 325 HFLGLAGIPRRYSDYPD 375
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 510 SIE*YQNLPPAEHSYNELPIL 572
S+E Q PPA H+YNELP +
Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87
>SB_43698| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 27.5 bits (58), Expect = 8.4
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 304 NITFFPQHFLGLAGIPRRY 360
+I F +H+L + G+PRRY
Sbjct: 174 SIRFLVEHYLDIQGVPRRY 192
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,623,825
Number of Sequences: 59808
Number of extensions: 166377
Number of successful extensions: 296
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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