Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0521
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    27   1.8  
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    27   3.2  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    27   3.2  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   4.2  
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   5.6  
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    25   9.8  

>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +2

Query: 101 EYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHS 220
           +YD++N DH  H    H     +  EA+         GHS
Sbjct: 21  DYDHHNHDHHGHDHHSHDSSSNSSSEAA-RLQFIQEHGHS 59


>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -2

Query: 313 HSCLLISNPSSVWCLKSSCWLGVHEFRDDLSRMPGRIEV 197
           H CLL+  P   W L +     + + R+ ++ +PG I +
Sbjct: 261 HHCLLVLTPFQKWALSAPRTNILAQNREGIASLPGYIAI 299


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 17/53 (32%), Positives = 21/53 (39%)
 Frame = +3

Query: 186 NTPTTSIRPGIRERSSRNS*TPSQQEDFKHQTLDGLLINRQLWLAEGLLSCQT 344
           N P      GIR  +S      SQ E   HQ L+      QLW A  +   +T
Sbjct: 75  NKPVEIYIVGIRALASMEENVKSQSEVDPHQVLESKRRQMQLWEASQIGKAET 127


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
 Frame = -1

Query: 587  TQQFRLTS---PLFEIRHWNGVTSKIYRLMLGS 498
            T   R TS   PLF ++ WN +TS  +    GS
Sbjct: 2144 TDPLRATSDFIPLFSMQRWNSITSMFFAHASGS 2176


>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = +2

Query: 140 FTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNA 250
           ++GH         ++   NHF+ +GH    +T  +N+
Sbjct: 242 YSGHNSPHTNYSASTPSFNHFNAAGHPTGNITPTLNS 278


>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = -3

Query: 291 IHLVFGV*SLLVGSAFMSFVTIFLECPDGSKWL 193
           ++L+FG+ S ++GS F   + + L  P GS++L
Sbjct: 23  LYLLFGLVSGIIGSVFSFIIRMELSAP-GSQFL 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,692,704
Number of Sequences: 5004
Number of extensions: 56073
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)