Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0521
(665 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56655| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 6e-11
SB_24582| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.030
SB_3924| Best HMM Match : E-MAP-115 (HMM E-Value=4.2) 30 1.9
SB_19792| Best HMM Match : SspH (HMM E-Value=6.6) 29 3.4
SB_29483| Best HMM Match : TerC (HMM E-Value=0.92) 29 3.4
SB_11110| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_52316| Best HMM Match : Fun_ATP-synt_8 (HMM E-Value=8) 29 4.5
SB_21915| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_4636| Best HMM Match : FGGY_N (HMM E-Value=7.3e-06) 28 5.9
SB_59209| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_41532| Best HMM Match : Extensin_2 (HMM E-Value=1.4) 28 7.9
>SB_56655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 66
Score = 64.9 bits (151), Expect = 6e-11
Identities = 29/59 (49%), Positives = 39/59 (66%)
Frame = +2
Query: 86 EAFFDEYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEPTR 262
E +FDEYDYYNFD +++ G+ K R+K+EA +TN F P GH RK++ K N E R
Sbjct: 2 EPYFDEYDYYNFD--RNVVEGNTRKGRSKREACLNTNRFCPGGHERKVLEKYRNTEKNR 58
>SB_24582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 69
Score = 35.9 bits (79), Expect = 0.030
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +2
Query: 98 DEYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHS-RKIVTKLMNAEPTRR 265
D+YD Y+FD H G K ++KKEAS++ N GHS RK + + E R+
Sbjct: 5 DKYDDYDFDERLH--EGGARKGKSKKEASQNKN-VSTQGHSERKAAEYIQHGEDKRK 58
>SB_3924| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)
Length = 344
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = +2
Query: 161 QRTKKEASEHTNHFDPSGH----SRKIVTKLMNAEPTRRLQTPNTRWIADQ*T 307
++TK++AS TN H SRK T + TR+LQ TR DQ T
Sbjct: 119 RKTKRQASRKTNTSKRQDHYKHASRKTKTSQSQDQETRKLQDQKTRKPQDQKT 171
>SB_19792| Best HMM Match : SspH (HMM E-Value=6.6)
Length = 244
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = +2
Query: 125 HDKHIFTGHGGKQRTKKEASEHTNHFDP----SGHSRKIVTKLMNAEPTRRLQT 274
H I+T H +T + ++H N+ + H+ +I T L+N T R+ T
Sbjct: 45 HAARIYTNHVNDSQTARIYTQHVNYSQTARIYTQHAARIYTNLVNDSQTARIYT 98
>SB_29483| Best HMM Match : TerC (HMM E-Value=0.92)
Length = 586
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = -1
Query: 533 VTSKIYRLMLGSFVALSRSKS 471
VTS IY L LGSF+AL R S
Sbjct: 256 VTSVIYALWLGSFLALGRQSS 276
>SB_11110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 862
Score = 28.7 bits (61), Expect = 4.5
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 74 VNMSEAFFDEYDYYNFDHDKHI 139
V+ +AF+ +DYY F HD ++
Sbjct: 508 VSEGKAFYGSFDYYQFPHDSNL 529
>SB_52316| Best HMM Match : Fun_ATP-synt_8 (HMM E-Value=8)
Length = 420
Score = 28.7 bits (61), Expect = 4.5
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 74 VNMSEAFFDEYDYYNFDHDKHI 139
V+ +AF+ +DYY F HD ++
Sbjct: 66 VSEGKAFYGSFDYYQFPHDSNL 87
>SB_21915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 97
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 264 DFKHQTLDGLLINRQLWLAEGLLSCQTKGGRYCGYPRSVRVDARL 398
+++ Q L G L QLW+ + SC ++ +CG + + L
Sbjct: 53 EYRQQLLSGTLT--QLWVVASMRSCTSRYTGFCGVKEEINLQQAL 95
>SB_4636| Best HMM Match : FGGY_N (HMM E-Value=7.3e-06)
Length = 512
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 311 MASRRTIELPNERRTLLRIPEEC 379
+ S RT +PN RTLL+IP C
Sbjct: 461 LVSNRTDLIPNINRTLLKIPNYC 483
>SB_59209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1002
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = -2
Query: 319 ASHSCLLISNPSSVWCLKSSCWLGVHEFRDDLSRMPGRIEVV 194
A+ + L + SV L SSC HE R L R G IEVV
Sbjct: 21 ATANSALTTRRGSVQILGSSCTKSNHEVRKALPRTYGIIEVV 62
>SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 460
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = +1
Query: 451 SPTHRGCDLERDNATNEPSISRYILDVTPFQCLISNNGLVSR 576
S THRG DL++ T IS + L+V P C+++ LVSR
Sbjct: 326 SITHRG-DLQKIALTTLYDISLH-LNVDPIYCVLTLKSLVSR 365
>SB_41532| Best HMM Match : Extensin_2 (HMM E-Value=1.4)
Length = 1633
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +2
Query: 122 DHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEPTRRLQTPN 280
++ + I GG K + + T F P+ SRK KL +++ ++ L P+
Sbjct: 1294 ENSQTITRERGGDDNCKSSSLQRTEDFSPAQFSRKSPRKLTSSKGSQLLLRPS 1346
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,307,067
Number of Sequences: 59808
Number of extensions: 428742
Number of successful extensions: 1060
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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