Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0520
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0105 - 5648436-5648536,5648650-5648692,5649152-5649244,564...    28   8.0  

>03_02_0105 -
           5648436-5648536,5648650-5648692,5649152-5649244,
           5649424-5649553,5649631-5649747,5650667-5650715,
           5651139-5651229,5651381-5651473,5651565-5651611,
           5651719-5651779,5651973-5652051,5652184-5652284,
           5652409-5652476,5652593-5652650
          Length = 376

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 167 FAIAGENTIKSIMYVYFLYFQHRPEFALFLSVTS 66
           F +AG+  I ++  +Y + F    EFAL++S  S
Sbjct: 35  FPLAGQPMIPNLAQIYLVGFYEEREFALYVSSIS 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,428,448
Number of Sequences: 37544
Number of extensions: 223614
Number of successful extensions: 374
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)