Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0520
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    24   1.2  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    24   1.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   3.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.3  

>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -2

Query: 152 ENTIKSIMYVYFLYFQHRPEFA 87
           E+ I S+++   LY+ H PE++
Sbjct: 258 ESNIASVLHALQLYYPHVPEYS 279


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -2

Query: 152 ENTIKSIMYVYFLYFQHRPEFA 87
           E+ I S+++   LY+ H PE++
Sbjct: 273 ESNIASVLHALQLYYPHVPEYS 294


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 5/20 (25%), Positives = 14/20 (70%)
 Frame = +1

Query: 469 YFALAEWVKYIYILYTYKMV 528
           + A+ EW+ +  +++TY ++
Sbjct: 404 FAAIIEWLSFFIVIFTYIII 423


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 5/19 (26%), Positives = 14/19 (73%)
 Frame = -3

Query: 490 PIRPMQNIASAMSQPPLKL 434
           P+ P+Q + +  ++PP+++
Sbjct: 23  PVNPVQELKALFAEPPVRV 41



 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 512 YNIYIYFTHSANAKYSFR 459
           Y IYI+FT S      FR
Sbjct: 599 YMIYIWFTTSGTISEKFR 616


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 512 YNIYIYFTHSANAKYSFR 459
           Y IYI+FT S      FR
Sbjct: 546 YMIYIWFTTSGTISEKFR 563


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,554
Number of Sequences: 438
Number of extensions: 3688
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)