Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0519
         (584 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    28   0.87 
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    25   6.2  
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    25   6.2  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    25   8.1  
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo...    25   8.1  

>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
 Frame = +1

Query: 52  SDSLFRVTIIVSPFKIVC*DQLILLSDKK--IKTGCVEFVTAISKPSRTESTRYSWH*VK 225
           S  L  +++  SP  I+  D+L+LL   +   K  C+    + S  SR +     W    
Sbjct: 637 SQELEDLSLHNSPDPIIYKDELVLLLPPREIAKQLCILEFQSFSHISRIQFLTKIWD--- 693

Query: 226 NVNQLTSEVKTSRERLSRHLGSMASQ 303
           N+N+ + + KTS   LS HL +  ++
Sbjct: 694 NLNRFSPKEKTSTFYLSNHLVNFVTE 719


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 7   ENHWSLSIKVLLHNSSDSLFRVTIIVSPF 93
           ENH++LS    L N+S     + IIV+ F
Sbjct: 301 ENHFTLSATDFLRNASTEKSHIFIIVNKF 329


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +3

Query: 216 LSKKC*PADIRGQDLAGTTQPSSG 287
           + K+C P+ ++G+D+ G  +  SG
Sbjct: 65  IQKQCIPSALKGRDILGAAKTGSG 88


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -1

Query: 470 HCHTYSEYKKIPVPT--INNRIQYSFTKLYINACN 372
           H H+ SE KK+P+ T  +   +    T +YIN  N
Sbjct: 588 HFHSVSEIKKLPMGTDELEKSMVRPSTAMYINRQN 622


>SPBC23E6.05 |arx1||ribosomal export complex Arx1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 417

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 220 VKNVNQLTSEVKTSRERLSRHLGSMASQKPLLAV 321
           +K    L SE+K  +     H GS++S++ LL +
Sbjct: 302 LKASRSLLSEIKKEKSVFPFHFGSLSSERNLLGL 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,311,553
Number of Sequences: 5004
Number of extensions: 45703
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)