Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0518
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10...   102   4e-23
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a...   100   2e-22
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    30   0.27 
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    28   1.4  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    27   1.9  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    27   2.5  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    27   3.3  
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    26   4.4  
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    26   5.8  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    26   5.8  
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    25   7.7  
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   7.7  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    25   7.7  

>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score =  102 bits (245), Expect = 4e-23
 Identities = 46/76 (60%), Positives = 57/76 (75%)
 Frame = +2

Query: 44  SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 223
           SKVS   +   V  +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL  +PRP 
Sbjct: 2   SKVSPANIRSSVETILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPN 61

Query: 224 MQVCVLGDQQLVTRLK 271
           M +C+LGD   + R K
Sbjct: 62  MSICILGDAHDLDRAK 77



 Score = 85.8 bits (203), Expect = 5e-18
 Identities = 40/57 (70%), Positives = 47/57 (82%)
 Frame = +3

Query: 510 MKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQR 680
           +KKVLCL VAVGHVDM  ++LA N+ L+INFLVSLLKK WQN+ SL +KSTMG P R
Sbjct: 158 LKKVLCLGVAVGHVDMAEEQLAANLSLAINFLVSLLKKGWQNIGSLVIKSTMGKPYR 214



 Score = 68.9 bits (161), Expect = 6e-13
 Identities = 33/46 (71%), Positives = 37/46 (80%)
 Frame = +1

Query: 373 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQ 510
           SE LIKQIPRLLGPGL+KAGKFP  +SH + +  KI EVK TIKFQ
Sbjct: 112 SEVLIKQIPRLLGPGLSKAGKFPSPVSHSDDLYGKIIEVKSTIKFQ 157


>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 216

 Score =  100 bits (240), Expect = 2e-22
 Identities = 46/76 (60%), Positives = 58/76 (76%)
 Frame = +2

Query: 44  SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 223
           SKVS  ++   V  +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL  +PRP 
Sbjct: 2   SKVSVASVRSNVEQILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPN 61

Query: 224 MQVCVLGDQQLVTRLK 271
           M +C+LGD   + R K
Sbjct: 62  MAICILGDAHDLDRAK 77



 Score = 83.0 bits (196), Expect = 4e-17
 Identities = 37/57 (64%), Positives = 47/57 (82%)
 Frame = +3

Query: 510 MKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQR 680
           +KKVLCL VAVGHV+M+ ++L  N+ L++NFLVSLLKK WQN+ SL +KSTMG P R
Sbjct: 158 LKKVLCLGVAVGHVEMSEEQLIANIMLAVNFLVSLLKKGWQNIGSLVVKSTMGKPHR 214



 Score = 69.3 bits (162), Expect = 5e-13
 Identities = 33/46 (71%), Positives = 37/46 (80%)
 Frame = +1

Query: 373 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQ 510
           SE LIKQIPRLLGPGL+KAGKFP  +SH + +  KI EVK TIKFQ
Sbjct: 112 SEVLIKQIPRLLGPGLSKAGKFPSPVSHADDLYGKITEVKSTIKFQ 157


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
 Frame = +2

Query: 26   LTNKMSSKVSRDTLYE---CVNAVLQSSKDKKRNFLETVELQIGLKNYD-PQKDKRFSG 190
            +T+K++  V ++  Y    C N +++SS   K NF +TV +     +YD P+ D  + G
Sbjct: 920  VTSKLNDLVIKEFTYPSSLCDNVLVRSSPSPKNNFDDTVFISYTSIDYDSPELDSVYEG 978



 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = +3

Query: 528  LSVAVGHVDMTPDEL----AQNVHLSINFLVSLLKKHW 629
            LS+A+G+++  P  L      N H+S+  L  L+K H+
Sbjct: 2706 LSMAIGNINDAPVRLNALLMDNAHVSLRRLFELVKNHY 2743


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 534 VAVGHVDMTPDELAQNVHLSINFLVS-LLKKHWQNVRSLHMKST 662
           +  GHV  T  ELA+NV   + F+   ++    + + S+H+K++
Sbjct: 201 IKCGHVSNTSTELAENVESILQFVSKHIVPDGAKGIASIHLKTS 244


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = -1

Query: 274 RF*PRHKLLVSKNANLHFRPRYVF*LYSAGETLVLLWVIVLQT 146
           R+ PR+K+  +K   + F P+ +F  +     L  L++++LQ+
Sbjct: 83  RWFPRNKIRTAKYTPIDFIPKNIFLQFQNVANLFFLFLVILQS 125


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +2

Query: 509 NEEGAVSFCSSWPCGHDS**ACSECASFHQLPCV 610
           NE      C  W C  D    C++C  ++ + CV
Sbjct: 257 NEPSNCKVCKKW-CAFDFSVQCADCKKYYHMDCV 289


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 554 HDS**ACSECASFHQLPCVTAQETLAEC 637
           H S  + S   ++HQL CV  Q+ L+EC
Sbjct: 52  HPSINSLSSFQTYHQLLCVLEQKHLSEC 79


>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 628 QCFLSSDTRKLMERCTF*ASSSGVMSTWPTATERHST 518
           +CF  SD +KL +RC    SS      WP   + +ST
Sbjct: 143 KCFHRSDVQKLSKRCDILFSSE-----WPEDVQENST 174


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 8/40 (20%), Positives = 22/40 (55%)
 Frame = +1

Query: 523 CVFL*QLAMWT*LLMSLLRMCIFPSTSLCHCSRNTGRMSD 642
           C FL    ++  + + +  +C+F  T++ +  +N  R+++
Sbjct: 37  CTFLLSTILYLGIAVIMSHLCVFDDTAMLYLRQNRSRLAE 76


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 489 DFINLLRHGLLVGEKTREFTSFVQTGTQQTGNLLDQ 382
           D   L RH  L   + + F +  Q GT+   NL DQ
Sbjct: 424 DLFRLFRHSNLSTSREQIFQNLEQLGTRVIKNLTDQ 459


>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +1

Query: 241 WRPATCDEAKTLNVPC 288
           W  A CDE KTL V C
Sbjct: 114 WSIAICDETKTLAVGC 129


>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 288

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +2

Query: 35  KMSSKVSRDTLYECVNAVLQSSKDKKRNFLETV 133
           K   K   DT+ E   A LQSS DK  NF +T+
Sbjct: 215 KRPDKSPFDTMTE---ATLQSSSDKSENFTKTL 244


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +2

Query: 77  VNAVLQSSKDKKRNFLETV 133
           +NA+L+ SK+KK N +E++
Sbjct: 370 INALLERSKEKKANVIESL 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,935,789
Number of Sequences: 5004
Number of extensions: 60932
Number of successful extensions: 200
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)