Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0518
(682 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6677| Best HMM Match : Ribosomal_L1 (HMM E-Value=0.4) 76 3e-14
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.37
SB_50940| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_3044| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_49727| Best HMM Match : RVT_1 (HMM E-Value=4.5e-07) 28 6.1
SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45) 28 6.1
SB_284| Best HMM Match : rve (HMM E-Value=0.001) 28 6.1
SB_51570| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_33701| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_29852| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_52977| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
>SB_6677| Best HMM Match : Ribosomal_L1 (HMM E-Value=0.4)
Length = 81
Score = 75.8 bits (178), Expect = 3e-14
Identities = 33/46 (71%), Positives = 41/46 (89%)
Frame = +1
Query: 373 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQ 510
S+SLIKQIPR+LGPGLNKAGKFP ++H E+M QKI++V+ TIKFQ
Sbjct: 28 SDSLIKQIPRILGPGLNKAGKFPTPINHNENMVQKIEDVRSTIKFQ 73
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 32.3 bits (70), Expect = 0.37
Identities = 11/44 (25%), Positives = 27/44 (61%)
Frame = +3
Query: 531 SVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKST 662
++ VGH E+ N+ +++ L ++ + W N++SL++K++
Sbjct: 322 AMKVGHTGQEKKEVISNIVEAVSGLAKIIPRGWNNIQSLNIKTS 365
>SB_50940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 531
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 615 AVTQGS*WKDAHSEQAHQESCPH 547
AV+ WK H+ Q QESCPH
Sbjct: 103 AVSNPCFWKWIHAHQTAQESCPH 125
>SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 650
Score = 28.7 bits (61), Expect = 4.6
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = -1
Query: 655 FICNDRTFCQC---FLSSDTRKLMERCTF*ASSSGVMSTWPTATERHSTF 515
F+ +D TF FLSSDT L TF +S + +S+ T STF
Sbjct: 262 FLSSDTTFLSSDTIFLSSDTTLLSSDSTFLSSDTTFLSSDTTLLSSDSTF 311
>SB_3044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 528 LSVAVGHVDMTPDELAQNVHLSINFLVSLLKKH 626
+S AV + TPD ++ V +N L SL KKH
Sbjct: 654 VSSAVSEMSDTPDNVSNQVEKVVNELKSLKKKH 686
>SB_49727| Best HMM Match : RVT_1 (HMM E-Value=4.5e-07)
Length = 1286
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 592 PSTSLCHCSRNTGRMSD 642
PS CHC N GRM D
Sbjct: 526 PSDPTCHCPSNNGRMKD 542
>SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)
Length = 773
Score = 28.3 bits (60), Expect = 6.1
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = -3
Query: 590 KMHILSKLIRSHVHMANCYRKTQHLLHWNLM 498
++ +L+K+ SH+ + C R+ + +L+W M
Sbjct: 90 RVEMLAKIHASHIGIQGCLRRAREVLYWPRM 120
>SB_284| Best HMM Match : rve (HMM E-Value=0.001)
Length = 1201
Score = 28.3 bits (60), Expect = 6.1
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = -3
Query: 590 KMHILSKLIRSHVHMANCYRKTQHLLHWNLM 498
++ +L+K+ SH+ + C R+ + +L+W M
Sbjct: 898 RVEMLTKIHASHIGIQGCLRRAREVLYWPKM 928
>SB_51570| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1950
Score = 27.9 bits (59), Expect = 8.0
Identities = 8/28 (28%), Positives = 19/28 (67%)
Frame = -3
Query: 590 KMHILSKLIRSHVHMANCYRKTQHLLHW 507
++ +L+K+ SH+ + C R+ + +L+W
Sbjct: 1612 RVEMLAKIHASHIGIQGCLRRAREVLYW 1639
>SB_33701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 974
Score = 27.9 bits (59), Expect = 8.0
Identities = 8/28 (28%), Positives = 19/28 (67%)
Frame = -3
Query: 590 KMHILSKLIRSHVHMANCYRKTQHLLHW 507
++ +L+K+ SH+ + C R+ + +L+W
Sbjct: 649 RVEMLAKIHASHIGIQGCLRRAREVLYW 676
>SB_29852| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 836
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -1
Query: 91 KNGIHALVERVTRHFRRHFVCQRTTYH 11
K G+H ++ +VT + RRH++ + T H
Sbjct: 284 KKGVHMILGQVTGNARRHYIPKFTANH 310
>SB_52977| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 929
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 390 ADSPFVGSRFEQSW*IPWSSLPPGVHDAED 479
+DSP+ G+ + W I S+ P VHD D
Sbjct: 725 SDSPYSGNSSGEDWDIYSSAQPTAVHDLPD 754
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,497,109
Number of Sequences: 59808
Number of extensions: 465786
Number of successful extensions: 1203
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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