Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0518
         (682 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal pro...   106   2e-23
AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal...    97   1e-20
AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal pro...    97   1e-20
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    31   0.76 
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    31   0.76 
Z77663-10|CAB01204.1|  543|Caenorhabditis elegans Hypothetical p...    30   1.8  
Z70206-1|CAA94124.1|  407|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AF099915-5|AAC68770.1|  118|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z70212-2|CAA94163.1|  430|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian el...    27   9.4  

>AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform a protein.
          Length = 216

 Score =  106 bits (254), Expect = 2e-23
 Identities = 47/69 (68%), Positives = 58/69 (84%)
 Frame = +2

Query: 44  SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 223
           SKVSR++L E +  VL+ S +K R F ET+ELQIGLKNYDPQKDKRFSG+++LK+IPRP 
Sbjct: 2   SKVSRESLNEAIAEVLKGSSEKPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHIPRPN 61

Query: 224 MQVCVLGDQ 250
           M+VCV GDQ
Sbjct: 62  MKVCVFGDQ 70



 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 45/57 (78%), Positives = 51/57 (89%)
 Frame = +3

Query: 510 MKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQR 680
           MKKVLCLSVAVGHV +T +EL  N+ LSINFLVSLLKK+WQNVRSL++KSTMG PQR
Sbjct: 158 MKKVLCLSVAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQR 214



 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 32/46 (69%), Positives = 40/46 (86%)
 Frame = +1

Query: 373 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQ 510
           SESLIKQIPR+LGPGLNKAGKFP +++H ES+  K DE++ T+KFQ
Sbjct: 112 SESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQ 157


>AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal
           protein L10A protein.
          Length = 186

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 45/57 (78%), Positives = 51/57 (89%)
 Frame = +3

Query: 510 MKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQR 680
           MKKVLCLSVAVGHV +T +EL  N+ LSINFLVSLLKK+WQNVRSL++KSTMG PQR
Sbjct: 128 MKKVLCLSVAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQR 184



 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 32/46 (69%), Positives = 40/46 (86%)
 Frame = +1

Query: 373 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQ 510
           SESLIKQIPR+LGPGLNKAGKFP +++H ES+  K DE++ T+KFQ
Sbjct: 82  SESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQ 127



 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 26/33 (78%), Positives = 31/33 (93%)
 Frame = +2

Query: 152 KNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQ 250
           KNYDPQKDKRFSG+++LK+IPRP M+VCV GDQ
Sbjct: 8   KNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQ 40


>AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform b protein.
          Length = 155

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 45/57 (78%), Positives = 51/57 (89%)
 Frame = +3

Query: 510 MKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQR 680
           MKKVLCLSVAVGHV +T +EL  N+ LSINFLVSLLKK+WQNVRSL++KSTMG PQR
Sbjct: 97  MKKVLCLSVAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQR 153



 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 32/46 (69%), Positives = 40/46 (86%)
 Frame = +1

Query: 373 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQ 510
           SESLIKQIPR+LGPGLNKAGKFP +++H ES+  K DE++ T+KFQ
Sbjct: 51  SESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQ 96


>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 166 TEGQAFLRHCKAKIHTAAENASLRSWRPATCDEA 267
           T+G+ +L  C  K+    E   +  W+   CDEA
Sbjct: 333 TDGKTYLNECFLKLAACKEQKDILVWKRGNCDEA 366


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 166 TEGQAFLRHCKAKIHTAAENASLRSWRPATCDEA 267
           T+G+ +L  C  K+    E   +  W+   CDEA
Sbjct: 341 TDGKTYLNECFLKLAACKEQKDILVWKRGNCDEA 374


>Z77663-10|CAB01204.1|  543|Caenorhabditis elegans Hypothetical
           protein F53F4.11 protein.
          Length = 543

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/57 (24%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +3

Query: 507 PMKKVLCLS-VAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPP 674
           P+++ +  S V VGH+  +  +L +N+   +  + S     + N+RS+++ ++ G P
Sbjct: 355 PLRRYMVRSCVNVGHLGQSSADLKENIDTVLEKIASKCPGGFANIRSIYLGASDGKP 411


>Z70206-1|CAA94124.1|  407|Caenorhabditis elegans Hypothetical
           protein C49F8.1 protein.
          Length = 407

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 531 SVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPP 674
           SV + H+ ++P+ L Q   L+  F  +     W+ +R   MKS +G P
Sbjct: 349 SVTIDHLRISPESLVQIARLAQAFGTN---PDWKKLRLADMKSALGTP 393


>AF099915-5|AAC68770.1|  118|Caenorhabditis elegans Hypothetical
           protein E02H9.4 protein.
          Length = 118

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +2

Query: 101 KDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYI 211
           K +K N  E VEL   +KNY P+ + R    V+ KY+
Sbjct: 41  KGEKYNGNEKVELTTTVKNYKPKNNTRKWPAVEAKYL 77


>Z70212-2|CAA94163.1|  430|Caenorhabditis elegans Hypothetical
           protein R04D3.3 protein.
          Length = 430

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +2

Query: 14  IGGSLTNKMSSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKR 181
           +GGS    + +   +D+L E ++ + +S K K    LET+  Q G K  D    +R
Sbjct: 189 VGGSSMEDVLTSDEKDSLSEAISNLPKSPKSKTDRDLETL-AQSGSKTRDSHSRRR 243


>AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian
           elks/cast/erc/rab6 interactingprotein homolog protein 1
           protein.
          Length = 836

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 385 IKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIK 504
           I +IP   G GLN A ++  L    ++M +K+++   +IK
Sbjct: 142 ISRIPTGTGSGLNIAREYEQLKVEYDTMMEKLNQTMNSIK 181


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,548,757
Number of Sequences: 27780
Number of extensions: 357479
Number of successful extensions: 922
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)