Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0518
(682 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27530.2 68415.m03331 60S ribosomal protein L10A (RPL10aB) 104 5e-23
At2g27530.1 68415.m03330 60S ribosomal protein L10A (RPL10aB) 104 5e-23
At1g08360.1 68414.m00925 60S ribosomal protein L10A (RPL10aA) si... 103 1e-22
At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC) 98 4e-21
At2g42650.1 68415.m05278 60S ribosomal protein-related similar t... 42 5e-04
At3g58660.1 68416.m06538 60S ribosomal protein-related contains ... 39 0.003
At1g06380.1 68414.m00674 ribosomal protein-related similar to PB... 35 0.057
At4g17880.1 68417.m02665 basic helix-loop-helix (bHLH) family pr... 32 0.31
At5g10610.1 68418.m01228 cytochrome P450 family protein similar ... 31 0.71
At1g08400.1 68414.m00929 chromosome structural maintenance prote... 30 1.2
At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related conta... 30 1.6
At3g45090.2 68416.m04862 2-phosphoglycerate kinase-related conta... 29 2.2
At3g45090.1 68416.m04863 2-phosphoglycerate kinase-related conta... 29 2.2
At4g32770.1 68417.m04662 tocopherol cyclase, chloroplast / vitam... 29 3.8
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01... 29 3.8
>At2g27530.2 68415.m03331 60S ribosomal protein L10A (RPL10aB)
Length = 216
Score = 104 bits (250), Expect = 5e-23
Identities = 46/72 (63%), Positives = 59/72 (81%)
Frame = +2
Query: 44 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 223
SK+ + + E + + S++KKRNF+ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 224 MQVCVLGDQQLV 259
M++C+LGD Q V
Sbjct: 62 MKICMLGDAQHV 73
Score = 89.0 bits (211), Expect = 3e-18
Identities = 39/57 (68%), Positives = 49/57 (85%)
Frame = +3
Query: 510 MKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQR 680
+KKVLC+ VAVG++ M +L QNV +S+NFLVSLLKK+WQNVR L++KSTMGPPQR
Sbjct: 158 LKKVLCMGVAVGNLSMEEKQLFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQR 214
Score = 79.0 bits (186), Expect = 3e-15
Identities = 35/46 (76%), Positives = 41/46 (89%)
Frame = +1
Query: 373 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQ 510
SES+IKQIPRLLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ
Sbjct: 112 SESVIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQ 157
>At2g27530.1 68415.m03330 60S ribosomal protein L10A (RPL10aB)
Length = 216
Score = 104 bits (250), Expect = 5e-23
Identities = 46/72 (63%), Positives = 59/72 (81%)
Frame = +2
Query: 44 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 223
SK+ + + E + + S++KKRNF+ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 224 MQVCVLGDQQLV 259
M++C+LGD Q V
Sbjct: 62 MKICMLGDAQHV 73
Score = 89.0 bits (211), Expect = 3e-18
Identities = 39/57 (68%), Positives = 49/57 (85%)
Frame = +3
Query: 510 MKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQR 680
+KKVLC+ VAVG++ M +L QNV +S+NFLVSLLKK+WQNVR L++KSTMGPPQR
Sbjct: 158 LKKVLCMGVAVGNLSMEEKQLFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQR 214
Score = 79.0 bits (186), Expect = 3e-15
Identities = 35/46 (76%), Positives = 41/46 (89%)
Frame = +1
Query: 373 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQ 510
SES+IKQIPRLLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ
Sbjct: 112 SESVIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQ 157
>At1g08360.1 68414.m00925 60S ribosomal protein L10A (RPL10aA)
similar to 60S ribosomal protein L10A GB:AAC73045
GI:3860277 from [Arabidopsis thaliana]
Length = 216
Score = 103 bits (246), Expect = 1e-22
Identities = 45/72 (62%), Positives = 58/72 (80%)
Frame = +2
Query: 44 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 223
SK+ + + E + + S+ KKRNF+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 224 MQVCVLGDQQLV 259
M++C+LGD Q V
Sbjct: 62 MKICMLGDAQHV 73
Score = 88.2 bits (209), Expect = 4e-18
Identities = 38/57 (66%), Positives = 49/57 (85%)
Frame = +3
Query: 510 MKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQR 680
+KKVLC+ VAVG++ M ++ QNV +S+NFLVSLLKK+WQNVR L++KSTMGPPQR
Sbjct: 158 LKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQR 214
Score = 79.4 bits (187), Expect = 2e-15
Identities = 35/46 (76%), Positives = 41/46 (89%)
Frame = +1
Query: 373 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQ 510
SES+IKQIPRLLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ
Sbjct: 112 SESVIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQ 157
>At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC)
Length = 217
Score = 98.3 bits (234), Expect = 4e-21
Identities = 43/73 (58%), Positives = 59/73 (80%), Gaps = 1/73 (1%)
Frame = +2
Query: 44 SKVSRDTLYECVNAVLQSSKDKK-RNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 220
SK+ + + E +++++ K+ K RNF ET+ELQIGLKNYDPQKDKRFSG+VKL ++PRP
Sbjct: 2 SKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPRP 61
Query: 221 KMQVCVLGDQQLV 259
KM++C+LGD Q V
Sbjct: 62 KMKICMLGDAQHV 74
Score = 86.2 bits (204), Expect = 2e-17
Identities = 37/57 (64%), Positives = 48/57 (84%)
Frame = +3
Query: 510 MKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQR 680
+KKVLC+ VAVG++ M ++ QNV +S+NFLVSLLKK+WQNVR L++KSTMGPP R
Sbjct: 159 LKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPNR 215
Score = 79.4 bits (187), Expect = 2e-15
Identities = 35/46 (76%), Positives = 41/46 (89%)
Frame = +1
Query: 373 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQ 510
SES+IKQIPRLLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ
Sbjct: 113 SESVIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQ 158
>At2g42650.1 68415.m05278 60S ribosomal protein-related similar to
PBK1 protein (GI:3668141) [Homo sapiens]; weak
similarity to 60S ribosomal protein L10a.
(Swiss-Prot:Q9SW75) [Chlamydomonas reinhardtii]
Length = 372
Score = 41.5 bits (93), Expect = 5e-04
Identities = 16/49 (32%), Positives = 30/49 (61%)
Frame = +3
Query: 510 MKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMK 656
M+ C ++ V + M D++ +NV ++N +V +L W+ +RSLH+K
Sbjct: 181 MRTGSCSAIKVAKLSMESDDIVENVTATLNGVVDVLPSRWKYIRSLHLK 229
>At3g58660.1 68416.m06538 60S ribosomal protein-related contains
weak similarity to 60S ribosomal protein L10A (CSA-19)
(NEDD-6) (Swiss-Prot:P53026) [Mus musculus]
Length = 446
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +3
Query: 525 CLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMK 656
C + VG + M E+ +NV ++N LV L W VRSLH+K
Sbjct: 206 CSVIKVGKLSMDICEITENVMATLNGLVEFLPNKWTYVRSLHLK 249
>At1g06380.1 68414.m00674 ribosomal protein-related similar to PBK1
protein (GI:3668141) {Homo sapiens}; weakly similar to
60S ribosomal protein L10a. (SP:Q963B6) [Fall armyworm]
{Spodoptera frugiperda}
Length = 254
Score = 34.7 bits (76), Expect = 0.057
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 525 CLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMK 656
C V V + M +E+A+NV ++N + L+ W+NV+ H+K
Sbjct: 197 CSVVKVAKLSMGRNEIAENVVAAMNGIGDLVPGRWKNVKLFHLK 240
>At4g17880.1 68417.m02665 basic helix-loop-helix (bHLH) family
protein bHLH protein, Arabidopsis thaliana,
PATCHX:E255557
Length = 589
Score = 32.3 bits (70), Expect = 0.31
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +2
Query: 485 KSREPLSSNEEGAVSFCSSWPC 550
K R P+S+NEEG +SF S PC
Sbjct: 351 KKRSPVSNNEEGMLSFTSVLPC 372
>At5g10610.1 68418.m01228 cytochrome P450 family protein similar to
Cytochrome P450 91A1 (SP:Q9FG65) [Arabidopsis
thaliana]; similar to cytochrome P450, Helianthus
tuberosus, EMBL:HTCYP81L
Length = 500
Score = 31.1 bits (67), Expect = 0.71
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 122 LETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVC 235
L V + G+K DP+ +KRF KL++ M VC
Sbjct: 185 LRLVSGKRGVKKSDPESEKRFLDDFKLRFFSSMSMNVC 222
>At1g08400.1 68414.m00929 chromosome structural maintenance
protein-related contains weak similarity to
RAD50-interacting protein 1 [Homo sapiens]
gi|11967435|gb|AAG42101
Length = 804
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 41 SSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKR 181
+SKV + N +L DKK ++ ++ L GL+ ++ QK+KR
Sbjct: 232 TSKVEHGEVDSIPNPLLLMQGDKKESYSQSFLLLCGLQQHNTQKEKR 278
>At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 738
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +3
Query: 570 LAQNVHLSINFLVSLLKKH 626
+ + VHLS+NF++ L+KKH
Sbjct: 322 IVEGVHLSLNFVMGLMKKH 340
>At3g45090.2 68416.m04862 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 698
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +3
Query: 570 LAQNVHLSINFLVSLLKKH 626
+ + VHLS+NF++ L+KKH
Sbjct: 279 VVEGVHLSLNFVMGLMKKH 297
>At3g45090.1 68416.m04863 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 717
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +3
Query: 570 LAQNVHLSINFLVSLLKKH 626
+ + VHLS+NF++ L+KKH
Sbjct: 298 VVEGVHLSLNFVMGLMKKH 316
>At4g32770.1 68417.m04662 tocopherol cyclase, chloroplast / vitamin
E deficient 1 (VTE1) / sucrose export defective 1 (SXD1)
identical to SP|Q94FY7 Tocopherol cyclase, chloroplast
precursor (Vitamin E deficient 1) (Sucrose export
defective 1) {Arabidopsis thaliana}
Length = 488
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 222 FGRGMYFSFTVPEKRLSFC 166
F G YF ++PEKR SFC
Sbjct: 91 FFEGWYFRVSIPEKRESFC 109
>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01612:
reticulocyte binding protein; contains TIGRFAM TIGR00864:
polycystin cation channel protein; similar to
fimbriae-associated protein Fap1 [Streptococcus
parasanguinis] (GI:3929312)
Length = 1498
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = -3
Query: 200 ALQCRRNACPSVGHSSSDQFEALQSPKSYVSCP*RIEERHSRTRRACHETL*TTFCLSE 24
A+ + HS + EALQS S V +++ SR R H TT L+E
Sbjct: 871 AVMAEERSARKAMHSKRQEIEALQSMISRVKSAASVDDIDSRVRNMEHTMQHTTLSLNE 929
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,644,106
Number of Sequences: 28952
Number of extensions: 330312
Number of successful extensions: 841
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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