Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0517
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0023 - 19325966-19326046,19326132-19326248,19326635-193267...    31   0.76 
04_03_0190 + 12448027-12450825                                         30   1.7  
05_03_0376 - 13252220-13252354,13252433-13252541,13253279-132533...    29   3.1  
04_03_1018 + 21753634-21753640,21754282-21754315,21754413-217544...    29   3.1  

>11_06_0023 -
           19325966-19326046,19326132-19326248,19326635-19326703,
           19326922-19327119,19327388-19327591,19327688-19327828,
           19328416-19328625,19329330-19329944
          Length = 544

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +2

Query: 332 AVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVAR 484
           A +A   +   IA +LKN KL ++++ +    L   +A +    + GK+ +
Sbjct: 405 AKLAANWIMGDIAAYLKNEKLSIDEIKLTPLELSELIASIRNGTISGKIGK 455


>04_03_0190 + 12448027-12450825
          Length = 932

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
 Frame = +2

Query: 197 RNNTRSQWHCYDDDQPYC*NAFLRS------GNYNVIVVDWSSFSLSTYSTAVMAVTGVG 358
           R N    +HC     P C   F+ S      GNY +++++W   +    ST+VM + G+G
Sbjct: 153 RGNLDGDYHCALPYSPQC-GYFINSDDMIGFGNYKMLLINW--LAQKDSSTSVMVILGMG 209


>05_03_0376 -
           13252220-13252354,13252433-13252541,13253279-13253337,
           13253608-13253700,13254078-13254153,13254405-13254467,
           13254535-13254629,13254743-13254845,13254930-13255024,
           13255098-13255156,13255445-13255656,13256090-13256222,
           13256691-13257081
          Length = 540

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 21  AFAFAACNGDAIQNLERFGSLNKYYYYSNAQRNPITLTEDHFP 149
           A  F + +  ++++  R   L+K +  SNA+   I +TED FP
Sbjct: 216 AQGFDSQSSSSVKSSTRDEKLHKSFQISNAENEQILVTEDDFP 258


>04_03_1018 +
           21753634-21753640,21754282-21754315,21754413-21754432,
           21754485-21755782
          Length = 452

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +1

Query: 580 GSGVNKNGLGIAIGHIDFFVNGRLVQPGCTNNLCSHNRAYEVFAAT 717
           G  ++   +G  +GH+ +  +G+    GC   + S   A E  AA+
Sbjct: 320 GGAIHHGAVGALLGHLSWAASGKCASGGCAGAVPSALAAVEALAAS 365


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,376,528
Number of Sequences: 37544
Number of extensions: 431013
Number of successful extensions: 1236
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)