Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0516
(703 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0156 - 11963580-11963914,11964422-11964517,11964618-119646... 37 0.013
09_01_0014 + 357398-357583,360213-360323,360520-360676,361067-36... 36 0.041
06_03_0852 - 25371461-25371783,25372080-25372159,25372472-253725... 34 0.13
08_02_1358 - 26372559-26372887,26373183-26373262,26373287-263734... 33 0.29
01_06_1202 + 35396165-35396260,35396398-35396549,35396694-353969... 29 4.7
02_02_0146 - 7171656-7172044,7172383-7175008 28 8.3
>04_03_0156 -
11963580-11963914,11964422-11964517,11964618-11964697,
11965250-11965290,11965402-11965548,11965922-11966035,
11968842-11968961,11969491-11969631,11969892-11970014,
11970357-11970566
Length = 468
Score = 37.1 bits (82), Expect = 0.013
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +3
Query: 291 CTNMLFAFAGRSEDMHNATMLPVKLGHTPAGIAVRQIAHYGQLINNNFFRRYDHG 455
C N++ AF G + + N+++ V L H P A + + H Q+I +YD+G
Sbjct: 317 CYNLMSAFTGDNCCLDNSSV-QVFLAHEPQATATKNMIHLAQMIRGGTIAKYDYG 370
Score = 33.1 bits (72), Expect = 0.22
Identities = 15/55 (27%), Positives = 32/55 (58%)
Frame = +1
Query: 1 GKRRLHYIGHSQGTTVFWAMGSLRPEYNSKIIAMQAYAPVAYLEFNANRLLKLIA 165
G++++HY+GHS GT + A S + + + + +P+A+L+ ++ L + A
Sbjct: 225 GQQKMHYVGHSLGTLIALAALSDQQQQIGMLRSAGLLSPIAFLDKMSSPLARAAA 279
>09_01_0014 +
357398-357583,360213-360323,360520-360676,361067-361233,
362012-362122,362206-362349,362436-362476,364134-364174,
364175-364261,365402-365724
Length = 455
Score = 35.5 bits (78), Expect = 0.041
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Frame = +1
Query: 10 RLHYIGHSQGTTVFWAMGSLRPEYNSKIIAMQAYAPVAYLE-FNANRLLKLIAPHANSIE 186
++ Y+GHSQGT + A ++ PE I + P++YL+ +A+ +L+ +A H ++
Sbjct: 236 KILYVGHSQGTIMGLAALTM-PEIVKMISSAALLCPISYLDHVSASFVLRAVAMH---LD 291
Query: 187 ALTSLIGINELFGRS 231
+ +GI++L RS
Sbjct: 292 QMLVTMGIHQLNFRS 306
Score = 31.5 bits (68), Expect = 0.67
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +2
Query: 524 PVFLHYVDDDIFADVRDVRKLQIELGRPVGMFRVPHATFSHLDFMWGSGAKELLY 688
P+++ Y D ADV DV++ ELG + + + H+DF+ AK+ +Y
Sbjct: 387 PIWMGYGGLDALADVTDVQRTIRELGSTPELLYI--GDYGHIDFVMSVKAKDDVY 439
>06_03_0852 -
25371461-25371783,25372080-25372159,25372472-25372554,
25372597-25372740,25372836-25372946,25373238-25373354,
25373436-25373562,25374160-25374296
Length = 373
Score = 33.9 bits (74), Expect = 0.13
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +1
Query: 10 RLHYIGHSQGTTVFWAMGSLRPEYNSKIIAMQAYAPVAYLEFNANRLLKLIA 165
++HYIGHS GT + A S + + + P+AYL ++LLKL A
Sbjct: 156 KIHYIGHSLGTLMILAAFS-EHKLLDVVRSAVLLCPIAYLSRTKSKLLKLAA 206
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Frame = +2
Query: 524 PVFLHYVDDDIFADVRDVRKLQIELGRP-----VGMFRVPHATFSHLDFMWGSGAKELLY 688
P+FL + +D DV D R L L + + + VP ++H DF+ A EL+Y
Sbjct: 306 PIFLTHGGEDYLGDVPDTRHLLRTLVKKHNSDSIEVIYVPD--YAHADFIMAYNAPELIY 363
>08_02_1358 -
26372559-26372887,26373183-26373262,26373287-26373420,
26373546-26373689,26373809-26373919,26374165-26374305,
26376839-26376964,26377072-26377263
Length = 418
Score = 32.7 bits (71), Expect = 0.29
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = +1
Query: 16 HYIGHSQGTTVFWAMGSLRPEYNSKIIAMQAYAPVAYLEFNANRLLKLIAPHANSIEALT 195
HY+GHS GT V A S K+ + +PVAYL + + ++ A + E ++
Sbjct: 184 HYVGHSMGTLVALAAFS-EGRMVDKLKSAALLSPVAYLS-HITTPIGVVLAKAFAGELIS 241
Query: 196 SLIGINE 216
L+GI E
Sbjct: 242 DLLGIAE 248
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = +2
Query: 524 PVFLHYVDDDIFADVRDVRKLQIEL---GRPVGMFRVPHAT-FSHLDFMWGSGAKELLYD 691
P+FL Y D +D DV L +L G V + +H DF+ G AK+L+Y+
Sbjct: 349 PIFLSYGGRDSLSDPADVALLLDDLRRGGHAGDRLTVQYLPQLAHADFVIGVCAKDLVYN 408
Query: 692 RTI 700
I
Sbjct: 409 DVI 411
>01_06_1202 +
35396165-35396260,35396398-35396549,35396694-35396938,
35397044-35398350
Length = 599
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 273 VFFQAMCTNMLFAFAGRSEDMH-NATMLPVKLGHT 374
VF+Q +C A R ++MH T +PVK G T
Sbjct: 217 VFYQPVCVRQCVANLQRHDNMHAETTAVPVKPGET 251
>02_02_0146 - 7171656-7172044,7172383-7175008
Length = 1004
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 100 MQAYAPVAYLEFNANRLLKLIAPHANSIEALTSL-IGINELFG 225
M +A + L+ NRL LI P S+ LTSL + N++ G
Sbjct: 494 MSRFANLTELDLAGNRLSGLIPPSMQSLTKLTSLNLSSNQISG 536
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,449,958
Number of Sequences: 37544
Number of extensions: 365210
Number of successful extensions: 796
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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