Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0516
         (703 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g15230.1 68415.m01737 lipase family protein similar to SP|P07...    41   0.001
At5g14180.1 68418.m01658 lipase family protein similar to SP|Q64...    31   0.56 
At1g15060.1 68414.m01800 expressed protein                             31   0.56 
At3g23280.2 68416.m02935 zinc finger (C3HC4-type RING finger) fa...    28   5.2  
At3g23280.1 68416.m02934 zinc finger (C3HC4-type RING finger) fa...    28   5.2  
At3g57570.1 68416.m06410 expressed protein                             28   6.9  
At5g01400.1 68418.m00053 expressed protein contains low similari...    27   9.1  
At2g34620.1 68415.m04253 mitochondrial transcription termination...    27   9.1  

>At2g15230.1 68415.m01737 lipase family protein similar to SP|P07098
           Triacylglycerol lipase, gastric precursor (EC 3.1.1.3)
           {Homo sapiens}; contains Pfam profile PF04083:
           ab-hydrolase associated lipase region
          Length = 393

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 21/63 (33%), Positives = 32/63 (50%)
 Frame = +3

Query: 291 CTNMLFAFAGRSEDMHNATMLPVKLGHTPAGIAVRQIAHYGQLINNNFFRRYDHGRLKNW 470
           CT+ L +  G +    NA+ +   L + P   +V+ I H  Q+I    F +YD+G  KN 
Sbjct: 246 CTDFLTSITG-TNCCFNASKIEYYLDYEPHPSSVKNIRHLFQMIRKGTFAQYDYGYFKNL 304

Query: 471 RVY 479
           R Y
Sbjct: 305 RTY 307



 Score = 35.1 bits (77), Expect = 0.045
 Identities = 21/60 (35%), Positives = 30/60 (50%)
 Frame = +2

Query: 524 PVFLHYVDDDIFADVRDVRKLQIELGRPVGMFRVPHATFSHLDFMWGSGAKELLYDRTIQ 703
           P+++ Y   D  ADV DV     EL     +  +    + H+DF+ GS AKE +Y   IQ
Sbjct: 325 PMWMGYGGTDGLADVTDVEHTLAELPSSPELLYLED--YGHIDFVLGSSAKEDVYKHMIQ 382



 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/81 (22%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
 Frame = +1

Query: 10  RLHYIGHSQGTTVFWAMGSLRPEYNSKIIAMQAYAPVAYLE-FNANRLLKLIAPHANSIE 186
           ++  +GHSQGT + +A    +P     + A     P++YL+   A  + +++  H   ++
Sbjct: 159 KIFLVGHSQGTIMSFA-ALTQPHVAEMVEAAALLCPISYLDHVTAPLVERMVFMH---LD 214

Query: 187 ALTSLIGINELFGRSDFFTNV 249
            +   +G++++  RSD    +
Sbjct: 215 QMVVALGLHQINFRSDMLVKL 235


>At5g14180.1 68418.m01658 lipase family protein similar to SP|Q64194
           Lysosomal acid lipase/cholesteryl ester hydrolase
           precursor (EC 3.1.1.13) {Rattus norvegicus}; contains
           Pfam profile PF04083: ab-hydrolase associated lipase
           region
          Length = 418

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 30/117 (25%), Positives = 51/117 (43%)
 Frame = +1

Query: 7   RRLHYIGHSQGTTVFWAMGSLRPEYNSKIIAMQAYAPVAYLEFNANRLLKLIAPHANSIE 186
           +++HY+GHS GT + +A  S +   + ++ +    +PVAYL    + +  +I      I 
Sbjct: 182 QKIHYLGHSLGTLIGFASFSEKGLVD-QVRSAAMLSPVAYL----SHMTTVI----GDIA 232

Query: 187 ALTSLIGINELFGRSDFFTNVGIDFALMAYFSRRCAQICYSLLLDAVKTCTMRLCCL 357
           A T L     + G  +F    G+    +     +    CY    D V   T + CCL
Sbjct: 233 AKTFLAEATSILGWPEFNPKSGLVGDFIKAICLKAGIDCY----DLVSVITGKNCCL 285



 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +2

Query: 524 PVFLHYVDDDIFADVRDVRKLQIELG-RPVGMFRVPHAT-FSHLDFMWGSGAKELLYDR 694
           P+F  Y   D  ADV+DV  L  +     +    V     ++H DF+ G  AK+++Y++
Sbjct: 351 PLFFSYGGLDSLADVKDVEFLLDQFKYHDIDKMNVQFVKDYAHADFIMGVTAKDVVYNQ 409


>At1g15060.1 68414.m01800 expressed protein
          Length = 578

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
 Frame = +1

Query: 10  RLHYIGHSQGTTVFWAMGSLRPEYNSKIIAMQAYAPVAY-LEFN-ANRLLKLIAPHANSI 183
           +L  IGHS G  + +AM S R  +  +  ++ A A +A  +++  +N  LKL+ P AN  
Sbjct: 356 KLFAIGHSMGGILLYAMLS-RCAFEGREPSVAAVATLASSVDYTTSNSALKLLIPLANPA 414

Query: 184 EALT 195
           EAL+
Sbjct: 415 EALS 418


>At3g23280.2 68416.m02935 zinc finger (C3HC4-type RING finger)
           family protein / ankyrin repeat family protein contains
           Pfam profile: PF00097 zinc finger, C3HC4 type (RING
           finger) and Pfam profile: PF00023 ankyrin repeat
          Length = 438

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = -1

Query: 406 CAICLTAMPAGVCPSFTGNIVALCMSSLRPAKANN 302
           CAICL A    VC    G+ VA CMS L+  K+ N
Sbjct: 387 CAICLDAPSEAVCVP-CGH-VAGCMSCLKEIKSKN 419


>At3g23280.1 68416.m02934 zinc finger (C3HC4-type RING finger)
           family protein / ankyrin repeat family protein contains
           Pfam profile: PF00097 zinc finger, C3HC4 type (RING
           finger) and Pfam profile: PF00023 ankyrin repeat
          Length = 462

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = -1

Query: 406 CAICLTAMPAGVCPSFTGNIVALCMSSLRPAKANN 302
           CAICL A    VC    G+ VA CMS L+  K+ N
Sbjct: 411 CAICLDAPSEAVCVP-CGH-VAGCMSCLKEIKSKN 443


>At3g57570.1 68416.m06410 expressed protein 
          Length = 1057

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 118 VAYLEFNANRLLKLIAPHANSIEALTSLIG 207
           V  L F+++R+LKLI   A S++   SLIG
Sbjct: 587 VTGLTFDSDRVLKLIPEWARSVQNWNSLIG 616


>At5g01400.1 68418.m00053 expressed protein contains low similarity to
            symplekin SP:Q92797 from [Homo sapiens]
          Length = 1467

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 18/76 (23%), Positives = 36/76 (47%)
 Frame = +1

Query: 31   SQGTTVFWAMGSLRPEYNSKIIAMQAYAPVAYLEFNANRLLKLIAPHANSIEALTSLIGI 210
            +QG +  W++  +RP   +  + +   + V +LE    + ++L+A    S+  +T  I  
Sbjct: 815  TQGLSAVWSLILMRPGIRNDCLNIALQSAVHHLEEIRMKAIRLVANKLYSLSFITEQI-- 872

Query: 211  NELFGRSDFFTNVGID 258
             E F +   F+ V  D
Sbjct: 873  -EEFAKDRLFSVVSDD 887


>At2g34620.1 68415.m04253 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 303

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = -2

Query: 324 CVQQKRITYLCTSPGKIRHQRKIYSHVRKEVRSAE*LIYSNETCKCLNTVGMWSNK 157
           C QQ + T+L T P  I+    ++SH    V      +   E   CL  +G+ S K
Sbjct: 18  CPQQSQSTFLSTKPTTIK--TNLHSHPLFTVADQTVTLQMKEKILCLELMGIDSGK 71


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,053,486
Number of Sequences: 28952
Number of extensions: 301306
Number of successful extensions: 669
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)