Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0514
(468 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 35 0.007
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 32 0.050
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 28 0.62
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 28 0.82
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb... 27 1.1
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 27 1.9
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 27 1.9
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 2.5
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 26 2.5
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 26 2.5
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc... 26 3.3
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 25 4.4
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 25 4.4
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 5.8
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 25 5.8
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 25 5.8
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar... 25 7.6
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 25 7.6
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 25 7.6
SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit Nse4|Sc... 25 7.6
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar... 25 7.6
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 34.7 bits (76), Expect = 0.007
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Frame = -2
Query: 263 SAVATGARGGLSTIAGPTEIGTNSST--MAGLTEIGSNSLTMAGPTEMGSNSSMMAGPTA 90
S++AT + G ST + T T+SST +A + GS++ ++A + S++S +A +A
Sbjct: 976 SSIATASVSGSSTSSVATASATDSSTSSIAAASVTGSSTSSVATASVTDSSTSSVATASA 1035
Query: 89 IGTKSSMMGAGAATPGLTRPLVGPATAT 6
+ +S + + T G + V A+AT
Sbjct: 1036 TDSSTSSIAVASVT-GSSTSSVATASAT 1062
Score = 31.1 bits (67), Expect = 0.088
Identities = 26/115 (22%), Positives = 54/115 (46%), Gaps = 2/115 (1%)
Frame = -2
Query: 341 NGIDTGSGDNRGRASLVDVQNDLHERSAVATGARGGLSTIAGPTEIGTNSST--MAGLTE 168
+ + T S + +S+ S+VAT + ST + T T+SST +A +
Sbjct: 989 SSVATASATDSSTSSIAAASVTGSSTSSVATASVTDSSTSSVATASATDSSTSSIAVASV 1048
Query: 167 IGSNSLTMAGPTEMGSNSSMMAGPTAIGTKSSMMGAGAATPGLTRPLVGPATATA 3
GS++ ++A + S++S +A + G+ SS + + T T + ++ ++
Sbjct: 1049 TGSSTSSVATASATDSSTSSVATASITGSLSSSIATASVTGSPTSSVTAVSSTSS 1103
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 31.9 bits (69), Expect = 0.050
Identities = 20/90 (22%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Frame = -2
Query: 263 SAVATGARGGLSTIAGPTEIGTNSSTMAGLTEIGSNSLTMAGPTE---MGSNSSMMAGPT 93
S+ +T LST + P+ ++SST + L+ S+S + + + S+SS + PT
Sbjct: 225 SSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPT 284
Query: 92 AIGTKSSMMGAGAATPGLTRPLVGPATATA 3
+ + S + +++P T + +++++
Sbjct: 285 STSSTISSSSSSSSSPTSTSSTISSSSSSS 314
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 28.3 bits (60), Expect = 0.62
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 413 GSIDNNHGLSYDFGFVNDNHGLW 345
G ID N +S FGF+ N GLW
Sbjct: 287 GIIDRNILVSRGFGFLKSNSGLW 309
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 27.9 bits (59), Expect = 0.82
Identities = 18/74 (24%), Positives = 29/74 (39%)
Frame = -2
Query: 263 SAVATGARGGLSTIAGPTEIGTNSSTMAGLTEIGSNSLTMAGPTEMGSNSSMMAGPTAIG 84
+A +TG+ G G T +S+ + GS + P +GS ++ TA
Sbjct: 165 AAASTGSLFGKPAATGTTSNAPPASSTSTTPATGSGGFSFGKPASLGSTNNASTSTTANS 224
Query: 83 TKSSMMGAGAATPG 42
S A + PG
Sbjct: 225 GFSFGKPATTSAPG 238
>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 478
Score = 27.5 bits (58), Expect = 1.1
Identities = 29/110 (26%), Positives = 42/110 (38%), Gaps = 1/110 (0%)
Frame = -2
Query: 407 IDNNHGLSYDFGFVN-DNHGLWDNGIDTGSGDNRGRASLVDVQNDLHERSAVATGARGGL 231
+ +N LS + ++N D + +D +N GR V+ SAVAT A L
Sbjct: 15 VTSNDELSSNKIYMNADQNNSRKKEMDGSLQNNGGRLQNVNPLGGNESMSAVATSAASSL 74
Query: 230 STIAGPTEIGTNSSTMAGLTEIGSNSLTMAGPTEMGSNSSMMAGPTAIGT 81
T + S T+ T + M+G G S G T GT
Sbjct: 75 PTAENGVSLNAASPTIHSNTPTVVSHPVMSGSELKGEESHNSPG-TLNGT 123
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 26.6 bits (56), Expect = 1.9
Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 2/111 (1%)
Frame = -2
Query: 329 TGSGDNRGRASLVDVQNDLHERSAVATGARGGLSTIAGPT--EIGTNSSTMAGLTEIGSN 156
TG N ++ D +L+ERS L + T EI + + +E +
Sbjct: 363 TGKRQNFINITVTDPSKNLYERSVKTAAELASLQNVTETTDNEIPNSPDFLDAASEEDEH 422
Query: 155 SLTMAGPTEMGSNSSMMAGPTAIGTKSSMMGAGAATPGLTRPLVGPATATA 3
++ +SS + P A+ K + P + PLV PA++++
Sbjct: 423 IPSL--------DSSSLLTPLALPNKKAFQPVKFRVPSFSSPLVKPASSSS 465
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 26.6 bits (56), Expect = 1.9
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Frame = -2
Query: 248 GARGGLSTIAGPTEIGTNSSTMAGLTE--IGSNSLTMAGPTEMGSNSSMMAGPTAIGTKS 75
G G+S I ++ +G+TE G + G+NS + +G S
Sbjct: 804 GNVSGMSGTQTSNPINNATANTSGMTEKAAGHRDSVIGNGGVTGANSMS----STLGGLS 859
Query: 74 SMMGAGAATPGLTRPLVG 21
SM G G A PG+ VG
Sbjct: 860 SMSGMGRAAPGMFMGNVG 877
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 2.5
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -2
Query: 449 GSNVSNLDRLGDGSIDNNHGLSYDFGFVNDNHGLWD 342
GSNV +++ GD S D N ++++ + DN GL D
Sbjct: 246 GSNVDDVEDSGDSSSDKN-SINHE---IRDNEGLED 277
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 26.2 bits (55), Expect = 2.5
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Frame = +1
Query: 34 LVSPGVAAP--APIIDDFVPIAVGPA--IIDEFEPISVGPA--IVNEFEPISVRPAIVDE 195
+++P V P AP++ + + PA + E PA +V E + RPA
Sbjct: 509 VITPSVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPA---- 564
Query: 196 FVPISVGPAIVDNPPLAPVA 255
VP+ V PP+APVA
Sbjct: 565 -VPVVPEALSVPQPPVAPVA 583
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 26.2 bits (55), Expect = 2.5
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -2
Query: 416 DGSIDNNH-GLSYDFGFVNDNHGLWDNGIDTGSGDNRGRASLVDVQNDLHERSAVATGA 243
D ID N L ++ GF +D+ +++ GD D+ N ++ +S TG+
Sbjct: 1211 DYPIDTNALSLDHEQGFSDDSDSVYEPSSPIEEGDEEVDGQRKDILNFMNSQSLTQTGS 1269
>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 488
Score = 25.8 bits (54), Expect = 3.3
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 160 EPISVRPAIVDEFVPISVGPAIVDNPPLAPVATALLS 270
+P++ + +++ VP+ V + PP A ALLS
Sbjct: 38 DPVTQQECTLEDLVPVKVPDFVRPRPPSATSLPALLS 74
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 25.4 bits (53), Expect = 4.4
Identities = 22/85 (25%), Positives = 35/85 (41%)
Frame = -2
Query: 317 DNRGRASLVDVQNDLHERSAVATGARGGLSTIAGPTEIGTNSSTMAGLTEIGSNSLTMAG 138
DN ++L N + S+ + + S A PT + +ST LT S SL
Sbjct: 155 DNEYHSNLATSSNPFSDGSSSKSASLTASSAAASPTVSFSPASTSENLTPTSSKSL---- 210
Query: 137 PTEMGSNSSMMAGPTAIGTKSSMMG 63
SN+S++ + SS+ G
Sbjct: 211 ----ASNTSLVQSFNSASRSSSISG 231
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 25.4 bits (53), Expect = 4.4
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -1
Query: 246 GKRRVVYDS--GSNGDRYELVDDGRPNGDRFEFVDNG 142
GKR VV S G+NG Y V G P G F+ + G
Sbjct: 413 GKRNVVIVSSAGNNGPAYTTV--GAPGGTTFDVISVG 447
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 25.0 bits (52), Expect = 5.8
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -2
Query: 215 PTEIGTNSSTMAGLTEIGSNSLTMAGPTEMGSNSS 111
PTE N +T+ LT IGS + M G + SN S
Sbjct: 335 PTEGSANLNTVTELTGIGSR-IAMNGSSVKASNIS 368
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 25.0 bits (52), Expect = 5.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 120 ELIYDGRSDSDRYKVVDDGSR 58
EL+Y D DR+ V+D G R
Sbjct: 262 ELVYPKLLDDDRFYVLDSGER 282
>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 25.0 bits (52), Expect = 5.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 270 REECCRNGGKRRVVYDSG 217
R + RNGG +RV+Y+ G
Sbjct: 161 RAQRLRNGGNKRVMYEEG 178
>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 24.6 bits (51), Expect = 7.6
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +1
Query: 34 LVSPGVAAPAPIIDDFVPIAVGPAIIDEFEPISV 135
++ V P DD V V PA I EP+S+
Sbjct: 705 ILENAVVVSTPSTDDLVEECVVPAAIVSGEPVSI 738
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 24.6 bits (51), Expect = 7.6
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = -2
Query: 404 DNNHGLSYDFGFVNDNHGLWDNGIDTGSGDNRGRASLVDVQN 279
DN+HGLS + ++ + GL D+ + SG +R R+ VD ++
Sbjct: 1295 DNSHGLSVEENRISKSPGL-DS---SDSGKSRKRSQSVDSED 1332
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 24.6 bits (51), Expect = 7.6
Identities = 23/88 (26%), Positives = 37/88 (42%)
Frame = -2
Query: 299 SLVDVQNDLHERSAVATGARGGLSTIAGPTEIGTNSSTMAGLTEIGSNSLTMAGPTEMGS 120
++ DV + HE S+ + G S ++ P+ I SS SNS P +
Sbjct: 371 NIFDVSRNNHEVSSPLIQSPG--SYVSMPS-INMVSSLPISAPVPNSNSQFPRRPNTFRT 427
Query: 119 NSSMMAGPTAIGTKSSMMGAGAATPGLT 36
NSS G + G S+ A + P ++
Sbjct: 428 NSSKSVGQGSSGVDSNQENAESFNPSIS 455
>SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit
Nse4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 300
Score = 24.6 bits (51), Expect = 7.6
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = -2
Query: 323 SGDNRGRASLVDVQNDLHERSAVATGARGGLSTIAGPTEIGTNSSTMAG 177
+G+ R ++D+ DL+E + + P E TNS+T G
Sbjct: 252 AGEIRNIQLVLDMTMDLYENIIKEYNIKESIIPTRAPVETSTNSNTWYG 300
>SPAC1093.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 24.6 bits (51), Expect = 7.6
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +1
Query: 46 GVAAPAPIIDDFVPIAVGPAIIDEFEPISVGPAIVN--EFEPISVRPAIVDEFVPISVGP 219
G+ PA D+ P I F + + P +++ F P+S+ P + F+P+S
Sbjct: 600 GIKFPANYFDNVYT----PNSISSFSEVLL-PNLISTLNFAPLSLIPLLRKSFLPLSYNG 654
Query: 220 AIVDNPPLAP 249
++ P L P
Sbjct: 655 FGIEAPSLNP 664
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,481,956
Number of Sequences: 5004
Number of extensions: 28655
Number of successful extensions: 110
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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