Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0513
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    88   1e-18
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   8.3  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 87.8 bits (208), Expect = 1e-18
 Identities = 43/68 (63%), Positives = 53/68 (77%), Gaps = 1/68 (1%)
 Frame = +1

Query: 1   TGIKIFR*LATIHGTQINYNP-NIL*RLGFVFLFTVGGLTGVILANSSIDITLHDTYYVV 177
           TGIKIF  LAT+ G  I ++   +L  +GF+ LFT+GGLTGVIL+NS +DI  HDTY+VV
Sbjct: 322 TGIKIFSWLATLTGGAIQWSRVPMLYAIGFLILFTIGGLTGVILSNSVLDIAFHDTYFVV 381

Query: 178 AHFHYVLS 201
           AHFHYVLS
Sbjct: 382 AHFHYVLS 389



 Score = 62.5 bits (145), Expect = 4e-11
 Identities = 27/44 (61%), Positives = 32/44 (72%)
 Frame = +3

Query: 258 GLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPD 389
           GL  N  +  IQF+ +FIGVNI F PQHFLGL G+PRR  DYP+
Sbjct: 408 GLMYNETLASIQFWILFIGVNIVFGPQHFLGLNGMPRRIPDYPE 451


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +1

Query: 112 LTGVILANSSIDITLHDTYYVV 177
           L  ++LAN+++D T+H  Y+++
Sbjct: 657 LDHILLANATLDKTVHSAYWLM 678


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,796,219
Number of Sequences: 5004
Number of extensions: 28091
Number of successful extensions: 73
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)