Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0513
         (593 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)                  101   3e-22
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)              73   2e-13
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.019
SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.019
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.019
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.019
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.019
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.019
SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)                     28   6.5  
SB_43698| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
          Length = 229

 Score =  101 bits (243), Expect = 3e-22
 Identities = 46/67 (68%), Positives = 56/67 (83%)
 Frame = +1

Query: 1   TGIKIFR*LATIHGTQINYNPNIL*RLGFVFLFTVGGLTGVILANSSIDITLHDTYYVVA 180
           TGIK+F  LAT++G  I  +  +L  +GFVFLFT+GGLTGVILANSS+D+ +HDTYYVVA
Sbjct: 20  TGIKVFSWLATLYGGAIRLDTPMLWAIGFVFLFTIGGLTGVILANSSLDVVMHDTYYVVA 79

Query: 181 HFHYVLS 201
           HFHYVLS
Sbjct: 80  HFHYVLS 86



 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 34/54 (62%), Positives = 37/54 (68%)
 Frame = +3

Query: 228 GIY*LISFITGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPD 389
           G Y     ITG   N    KI F+ +FIGVNITFFPQHFLGLAG PRRYSD+ D
Sbjct: 96  GFYFWFGKITGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFAD 149



 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 524 SIE*YQNLPPAEHSYNELPIL 586
           S+E  Q  PPA H+YNELP +
Sbjct: 199 SLEWVQQSPPALHTYNELPFV 219


>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 34/54 (62%), Positives = 37/54 (68%)
 Frame = +3

Query: 228 GIY*LISFITGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPD 389
           G Y     ITG   N    KI F+ +FIGVNITFFPQHFLGLAG PRRYSD+ D
Sbjct: 10  GFYFWFGKITGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFAD 63



 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 524 SIE*YQNLPPAEHSYNELPIL 586
           S+E  Q  PPA H+YNELP +
Sbjct: 113 SLEWVQQSPPALHTYNELPFV 133


>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +3

Query: 339 HFLGLAGIPRRYSDYPD 389
           HFLGLAG PRRYSD+ D
Sbjct: 1   HFLGLAGFPRRYSDFAD 17



 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 524 SIE*YQNLPPAEHSYNELPIL 586
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +3

Query: 339 HFLGLAGIPRRYSDYPD 389
           HFLGLAG PRRYSD+ D
Sbjct: 1   HFLGLAGFPRRYSDFAD 17


>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +3

Query: 339 HFLGLAGIPRRYSDYPD 389
           HFLGLAG PRRYSD+ D
Sbjct: 1   HFLGLAGFPRRYSDFAD 17



 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 524 SIE*YQNLPPAEHSYNELPIL 586
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +3

Query: 339 HFLGLAGIPRRYSDYPD 389
           HFLGLAG PRRYSD+ D
Sbjct: 1   HFLGLAGFPRRYSDFAD 17



 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 524 SIE*YQNLPPAEHSYNELPIL 586
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +3

Query: 339 HFLGLAGIPRRYSDYPD 389
           HFLGLAG PRRYSD+ D
Sbjct: 1   HFLGLAGFPRRYSDFAD 17



 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 524 SIE*YQNLPPAEHSYNELPIL 586
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +3

Query: 339 HFLGLAGIPRRYSDYPD 389
           HFLGLAG PRRYSD+ D
Sbjct: 1   HFLGLAGFPRRYSDFAD 17



 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 524 SIE*YQNLPPAEHSYNELPIL 586
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)
          Length = 319

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 513 ISHHQLNDIKIYHQQNIHIMNYQF 584
           I+HHQ + I I H Q+  I+NY +
Sbjct: 296 INHHQSSSIIINHHQSSSIINYYY 319


>SB_43698| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 342

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 318 NITFFPQHFLGLAGIPRRY 374
           +I F  +H+L + G+PRRY
Sbjct: 174 SIRFLVEHYLDIQGVPRRY 192


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,862,943
Number of Sequences: 59808
Number of extensions: 169386
Number of successful extensions: 308
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)