Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0513
         (593 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17260.1 68414.m02102 ATPase 10, plasma membrane-type, putati...    28   5.4  
At2g19560.1 68415.m02285 proteasome protein-related weak similar...    27   7.1  
At2g43030.1 68415.m05340 ribosomal protein L3 family protein con...    27   9.4  

>At1g17260.1 68414.m02102 ATPase 10, plasma membrane-type, putative
           / proton pump 10, putative / proton-exporting ATPase,
           putative strong similarity to SP|Q43128 ATPase 10,
           plasma membrane-type (EC 3.6.3.6) (Proton pump 10)
           {Arabidopsis thaliana}; contains InterPro accession
           IPR001757: ATPase, E1-E2 type; contains Pfam profile
           PF00690: Cation transporter/ATPase, N-terminus
          Length = 947

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 249 FITGLSLNSYILKIQFFTIFIGVNITFFPQHF 344
           F TG+ + +Y+  +     +I V+ TFF +HF
Sbjct: 717 FATGIVIGTYLALVTVLFYWIIVSTTFFEKHF 748


>At2g19560.1 68415.m02285 proteasome protein-related weak similarity
           to 26S proteasome non-ATPase regulatory subunit 3 (26S
           proteasome regulatory subunit S3) (p58) (Transplantation
           antigen P91A) (Tum-P91A antigen) (Swiss-Prot:P14685)
           [Mus musculus]
          Length = 413

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
 Frame = -3

Query: 432 YMNLMKKLYFMKYMSLDNLNIVEVFQLNLKNVVEKMLYL-LQ*IL*KIE----FLVYKNL 268
           Y  LMKK+Y  + +S    +     QL L+ + + + +L +   L ++E     L+YKNL
Sbjct: 328 YQRLMKKIYINQKLS----DPARAHQLKLEGIAKALRWLDMDMDLDEVECIMTILIYKNL 383

Query: 267 MKG 259
           +KG
Sbjct: 384 VKG 386


>At2g43030.1 68415.m05340 ribosomal protein L3 family protein
           contains Pfam profile PF00297: ribosomal protein L3
          Length = 271

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -2

Query: 442 NREIYEPNEEIIFHEIYESG 383
           N E +EPN++++F EI++ G
Sbjct: 141 NIEGFEPNQKLVFDEIFKEG 160


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,618,579
Number of Sequences: 28952
Number of extensions: 124424
Number of successful extensions: 223
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)