Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0512
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    29   0.72 
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    28   1.7  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    27   2.2  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    27   2.2  
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    27   3.8  
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    26   5.0  
SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual      26   6.7  

>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
 Frame = -2

Query: 273 PNSSSIDLLTISANCLSFPERVTSSYEIGWYLSH---QGLLYVHSTTFSLGGDICIP 112
           PN     L  I A CL  PE+    +E    LS+   Q +L    T+ S+  D+ IP
Sbjct: 168 PNEIDYMLSAIKALCLEAPEQAAQLFETNPQLSYAVFQAMLMKRYTSESVVADLLIP 224


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = -3

Query: 260 ALISSPYQRIAFHFLSELLAHMK 192
           +L S  YQ+IAF +LS+L AH+K
Sbjct: 269 SLNSRFYQKIAFAYLSQLDAHLK 291


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/62 (25%), Positives = 33/62 (53%)
 Frame = -2

Query: 372 RVIPFPVNSSVTRSPDILWRFASHMINDGVHVNPNSSSIDLLTISANCLSFPERVTSSYE 193
           +V+  P+++ +T     L+  A   IN+    + ++SSI+     +  +SFP  V ++Y 
Sbjct: 579 KVLGTPIDTIITTEDRELFARAMDEINEKCAKSASASSIEEAIKVSKDISFPVIVRAAYA 638

Query: 192 IG 187
           +G
Sbjct: 639 LG 640


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
 Frame = +1

Query: 247 EEINAAGVRIYVDAVINHMTGEPPENIGTAGNTAVYREW-----YYPAVPYRAEH-FNWP 408
           + ++  G+ + VD V+NHM    P NI    +  +YR +     Y+P  P   +   +  
Sbjct: 127 DALHDRGMYLMVDTVVNHMGSSDPRNI----DYGIYRPFNQSSHYHPMCPIEQDKPLSLE 182

Query: 409 HCVIDGSDYVNDALRVRNCELV 474
            C I   D     +   N +++
Sbjct: 183 QCWIGTEDMTLPDIDTENPQII 204


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 18/68 (26%), Positives = 32/68 (47%)
 Frame = +1

Query: 262 AGVRIYVDAVINHMTGEPPENIGTAGNTAVYREWYYPAVPYRAEHFNWPHCVIDGSDYVN 441
           AG+ + +D+++N M   PP  +  A         Y    P+  E +  P+C+ID  D  +
Sbjct: 132 AGIWVMLDSIVNSMALAPP--LADAD--------YSSLNPFNKESYFHPYCLIDW-DITD 180

Query: 442 DALRVRNC 465
           +   V +C
Sbjct: 181 NETNVMDC 188


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 645 HGFPSNARPYIYQEVIDYGG 704
           HG+  NA PY  Q +  YGG
Sbjct: 337 HGYHGNANPYYAQNMNMYGG 356


>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 272

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 240 SANCLSFPERVTSSYEIG 187
           S N + FPE +TS YE G
Sbjct: 37  STNLILFPELITSGYECG 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,169,948
Number of Sequences: 5004
Number of extensions: 66947
Number of successful extensions: 194
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)