Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0512
         (757 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_02_0012 - 11770058-11770770,11770919-11771000,11771064-117710...    31   0.99 
08_01_0399 + 3524723-3525272,3525468-3525544,3526816-3526861,352...    31   1.3  
05_04_0301 + 19983073-19983196,19984508-19985105,19985190-199854...    31   1.3  
05_04_0391 - 20862788-20862935,20863704-20863822,20864922-20865332     29   4.0  
03_05_0704 - 26953474-26953643,26953770-26953801,26953915-269540...    29   4.0  

>07_02_0012 -
           11770058-11770770,11770919-11771000,11771064-11771072,
           11771630-11771877,11772006-11772183,11772270-11772278
          Length = 412

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 313 PPENIGTAGNTAVYREWYYPAVPYRA-EHFNWP 408
           PPE+   A N+  Y  +YYPA PY   +++ +P
Sbjct: 344 PPESEKMAMNSLCYSYYYYPAYPYPCHQYYQYP 376


>08_01_0399 +
           3524723-3525272,3525468-3525544,3526816-3526861,
           3527121-3527235,3528252-3528306,3528432-3528557
          Length = 322

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = -2

Query: 498 SLIEILQAYQLTVAYPQSVIDVVRTINNTVRP 403
           S++E++    LT+A+ +S + + RT+ NT RP
Sbjct: 189 SVLELMDVKDLTLAHVKSHLQMYRTVKNTERP 220


>05_04_0301 +
           19983073-19983196,19984508-19985105,19985190-19985442,
           19985947-19985979
          Length = 335

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 307 GEPPENIGTAGNTAVYREWYYPAVPYRAEHFNWPHCV 417
           G+P  ++G++  TAVY +W  PA+ Y   + N  H +
Sbjct: 287 GQPDLSMGSSSGTAVYPQWPTPAMIYPHCYDNLGHMI 323


>05_04_0391 - 20862788-20862935,20863704-20863822,20864922-20865332
          Length = 225

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = -3

Query: 710 CLTAVVNDFLIDVGPSVGRKAVGSVKIVQTIVNNKQILRPHVFCCVNPKSGDT*VNEFVH 531
           C   V  + L+  GP +G   +  VK +   V      +P  FCC    SG+  V E ++
Sbjct: 134 CKPEVEVEALVIQGPKLGT-VLSQVKKLDASVLVLSQCKPSPFCCFMRSSGEEFVEECIN 192

Query: 530 KID 522
           + D
Sbjct: 193 RAD 195


>03_05_0704 -
           26953474-26953643,26953770-26953801,26953915-26954009,
           26954107-26954180,26954283-26954412,26954522-26954585,
           26954660-26954722,26954795-26954937,26955386-26955523,
           26955610-26955731,26955805-26955976,26956559-26956630,
           26956753-26956887,26956987-26957103,26957184-26957316,
           26957455-26957561,26958060-26958077,26958235-26958379,
           26958472-26958671,26960744-26961421
          Length = 935

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 337 GNTAVYREWYYPAVPYRAEHFNWPHCVIDGSDYVNDALRVRNCELV-GLKDLNQANEH 507
           GN     +++     Y  +H NWP C+  GSD     L +  C ++ G +   + NEH
Sbjct: 388 GNRISVVQYFKKQYNYSLKHVNWP-CLQAGSDSRPKYLPMEVCSILEGQRYSKKLNEH 444


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,353,017
Number of Sequences: 37544
Number of extensions: 461787
Number of successful extensions: 1176
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)