Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0512
(757 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.036
SB_17270| Best HMM Match : ABC_tran (HMM E-Value=5.1e-08) 32 0.58
SB_8553| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_35163| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_58102| Best HMM Match : LRR_1 (HMM E-Value=1.3) 30 2.3
SB_6110| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_50052| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_15422| Best HMM Match : TACC (HMM E-Value=6.4e-20) 29 4.1
SB_9232| Best HMM Match : Coq4 (HMM E-Value=1.8) 29 5.4
SB_40259| Best HMM Match : LRR_1 (HMM E-Value=3.5e-05) 28 7.1
>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3066
Score = 35.9 bits (79), Expect = 0.036
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = -2
Query: 267 SSSIDLLTISANCLSFPER-VTSSYEIGWYLSHQGLLYVHSTTFSLGGDICIPPKPLGPK 91
SS + + NC S + VTS+++I +Y+ H GL + +TF L +C P +P
Sbjct: 1381 SSMERIAFLKRNCYSIGQLGVTSAFDIMYYILHAGL--IPPSTFGLALQLCFPERPADDP 1438
Query: 90 NR 85
R
Sbjct: 1439 KR 1440
>SB_17270| Best HMM Match : ABC_tran (HMM E-Value=5.1e-08)
Length = 771
Score = 31.9 bits (69), Expect = 0.58
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 406 PHCVIDGSDYVNDALRVRNCELVGLKDLNQAN 501
PH VID S N + +L+G+++LN++N
Sbjct: 461 PHTVIDTSSTANLVASTKGVQLIGMRELNESN 492
>SB_8553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 982
Score = 31.5 bits (68), Expect = 0.76
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Frame = -2
Query: 471 QLTVAYPQSVIDVVRTINNTVRPVEMFRSVWNSRVIPFPVNSSVTRSPDILW-RFASHMI 295
+LT Q +D+ ++N V P+E S +S ++SSV S D +W +H
Sbjct: 809 KLTALSEQEYLDLTSPLSNPVAPIETPPSSESSPTPRESLSSSVFESTDNIWTSMNNHEP 868
Query: 294 NDGVHV-NPNSSSIDLLTISANC 229
G H +++++D ++ +C
Sbjct: 869 KHGPHCRGSHTTNVDTNEVTYSC 891
>SB_35163| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 929
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/73 (26%), Positives = 33/73 (45%)
Frame = +2
Query: 62 NDIADECERFLGPRGFGGIQISPPNENVVLWTYNRPWWERYQPISYELVTRSGNERQFAD 241
NDI +EC R G + ++ NE+ V + R W+ Y +L+ R N +
Sbjct: 780 NDILEECRR-----GGANVMVASHNEDSVRFAVKRKWYSTY---GEDLLLRYANHYRCVF 831
Query: 242 MVRRSMLLELGFT 280
+ + + ELG +
Sbjct: 832 LFSSTGMYELGIS 844
>SB_58102| Best HMM Match : LRR_1 (HMM E-Value=1.3)
Length = 309
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = +1
Query: 418 IDGSDYVNDALRVRNCELVGLK--DLNQANE 504
+DG+ Y+++ALR NC+L L D N NE
Sbjct: 273 VDGAKYIDEALRHENCKLTKLSIGDNNIGNE 303
>SB_6110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2051
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/45 (37%), Positives = 19/45 (42%)
Frame = +1
Query: 316 PENIGTAGNTAVYREWYYPAVPYRAEHFNWPHCVIDGSDYVNDAL 450
PE I TA+Y E Y P A H P C I G Y+ L
Sbjct: 1553 PEQIEAFCKTAMYDELYLTFSPAMAHHAYVPLCGIMGGKYMETVL 1597
>SB_50052| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 538
Score = 29.5 bits (63), Expect = 3.1
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 56 KWNDIADECERFLGPRGFGGIQISPPNENV 145
K ++ D+ F+ RGFGG++ PP + +
Sbjct: 150 KTGEVKDKVTAFIVERGFGGVESGPPEKKM 179
>SB_15422| Best HMM Match : TACC (HMM E-Value=6.4e-20)
Length = 1362
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -2
Query: 288 GVHVNPNSSSIDLLTISANCLSFPERVTSSYEIGWYLSHQG 166
GV P +DL +C+S P R + I +++ H+G
Sbjct: 563 GVLTLPGEGRVDLGEFVGDCVSSPNRCRNGLTISFWMKHRG 603
>SB_9232| Best HMM Match : Coq4 (HMM E-Value=1.8)
Length = 1392
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 642 AHGFPSNARPYIYQEVIDYGGEAISRDEYTP 734
+H PS+ R Y+Y V D + D+YTP
Sbjct: 1360 SHVLPSDQRSYVYVPVEDVDHICVFTDKYTP 1390
>SB_40259| Best HMM Match : LRR_1 (HMM E-Value=3.5e-05)
Length = 320
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 421 DGSDYVNDALRVRNCELVGLKDLNQAN 501
+G+ Y+ +ALR NC+L L D+N+ N
Sbjct: 198 EGAKYIGEALRHENCKLTKL-DMNKNN 223
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,397,272
Number of Sequences: 59808
Number of extensions: 519873
Number of successful extensions: 1215
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1215
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -