Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0512
         (757 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44930.2 68418.m05510 exostosin family protein contains Pfam ...    28   5.8  
At5g44930.1 68418.m05509 exostosin family protein contains Pfam ...    28   5.8  
At1g16930.1 68414.m02053 F-box family protein contains F-box dom...    28   7.7  

>At5g44930.2 68418.m05510 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 443

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +2

Query: 95  GPRGFGGIQISPPNENVVLWTYNRPWWERYQPISYELVTRSGNE-RQFADMVRRSMLLEL 271
           G  GFG        E++V W  ++ WW R     + +V    N  ++  D V+ ++LL  
Sbjct: 151 GRPGFG-YSDEEMQESLVSWLESQEWWRRNNGRDHVIVAGDPNALKRVMDRVKNAVLLVT 209

Query: 272 GF 277
            F
Sbjct: 210 DF 211


>At5g44930.1 68418.m05509 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 443

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +2

Query: 95  GPRGFGGIQISPPNENVVLWTYNRPWWERYQPISYELVTRSGNE-RQFADMVRRSMLLEL 271
           G  GFG        E++V W  ++ WW R     + +V    N  ++  D V+ ++LL  
Sbjct: 151 GRPGFG-YSDEEMQESLVSWLESQEWWRRNNGRDHVIVAGDPNALKRVMDRVKNAVLLVT 209

Query: 272 GF 277
            F
Sbjct: 210 DF 211


>At1g16930.1 68414.m02053 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 449

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +1

Query: 352 YREWYYPAVPYRAEHFNWPHCVIDGSDYVNDALRVRNCE-LVGLKDLNQANEHTE 513
           ++ W    +  R  HFN  + V D  + V   L + +CE LV L+    A +H E
Sbjct: 103 FKSWINAVIKRRVCHFNVHNEVDDDDELVKMPLSLYSCERLVNLQLYRVALDHPE 157


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,790,248
Number of Sequences: 28952
Number of extensions: 358913
Number of successful extensions: 973
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)