Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0511
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    31   0.25 
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1...    29   0.75 
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    28   1.3  
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch...    27   3.0  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    27   3.0  
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    26   5.3  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   9.3  

>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 11/60 (18%)
 Frame = -2

Query: 444 YVLTRDVRVCK-----------IQIDNLNISGIPKLFLGKRPLF*NAITRLFLVHTKCLP 298
           ++L +D+R+C+           +Q+  LNI  I   F  + PL  NA+   FL+ T+ LP
Sbjct: 43  FILAQDIRICRDSNKFDNLAILLQVCVLNIVSIQNKFSEQYPLKKNALLNSFLILTRLLP 102


>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -3

Query: 392 IYQGFPNCFWVRDPFFKMLSL 330
           +Y+G P+CFWV   ++ MLSL
Sbjct: 298 VYEGVPHCFWV---YYPMLSL 315


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +1

Query: 22  VYL*TVYHICVMYNIHDI*AIVCLVHENYEIYIKKVIPTHT*RFNWPFYYASYC 183
           VY  + Y    ++ IH I   + L+   Y IY   +  TH   F    YY  +C
Sbjct: 204 VYGASFYFATGLHGIHIIVGTILLLVATYNIYTYHLTNTHHNGFECGIYYWHFC 257


>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
           dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 366 KTIWESLIYLDYLFVFYKHEHLLLT 440
           K +WESL + D   +F K  HL+ T
Sbjct: 94  KKVWESLPFADRSAIFLKAAHLIST 118


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -3

Query: 374 NCFWVRDPFFKMLSLVFFLFIQNAYQFKNF 285
           N + VRDPFFKML+     F+ NA+   +F
Sbjct: 102 NKYPVRDPFFKMLNRSLATFM-NAFTASDF 130


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 591 KYNSIKANEYKTITTAF*NFNYSIDLFILICHFRQNKLKS 710
           K  SI    Y+T+ T   N+   ID+ +LIC    ++LKS
Sbjct: 311 KTYSIIITGYETVCTYLRNYGCGIDIDLLICD-EAHRLKS 349


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 539 IVERYRNIKCVSQNNCCRICINWHFLPRSL 450
           I+   ++  CVS N    + +NW+F PR +
Sbjct: 127 IISFEKSRPCVSTNLYDSVRLNWYFRPRDI 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,091,335
Number of Sequences: 5004
Number of extensions: 63887
Number of successful extensions: 106
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)