Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0511
         (784 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0428 - 3379116-3379262,3379357-3379537,3379690-3379785,337...    28   7.3  

>05_01_0428 -
           3379116-3379262,3379357-3379537,3379690-3379785,
           3379886-3380034,3380120-3380392,3380895-3380983,
           3381923-3382015,3382143-3382238,3382370-3382477,
           3382917-3383208
          Length = 507

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +3

Query: 186 FISHQASLLLYNYYYRID--RDSQFTLSLNNLTDRKVFKLVSILYEQEKDE 332
           F++  A   L N++ R    +D++F +S  +     V +L  ++YE+ KD+
Sbjct: 164 FVAEDAYSFLVNWFKRFPQYKDNEFYISGESYAGHYVPQLADLVYERNKDK 214


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,303,197
Number of Sequences: 37544
Number of extensions: 318159
Number of successful extensions: 488
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)