Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0510
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p...    94   2e-20
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    26   5.2  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    26   5.2  
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    25   9.1  

>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 94.3 bits (224), Expect = 2e-20
 Identities = 39/84 (46%), Positives = 56/84 (66%)
 Frame = +3

Query: 3   SFDQYATEVKSGRLEWSPVHKSAKFWRENAARLNERGQELLRTLVHLLEKSRDPVVLAVA 182
           +FD Y +E+ +G L WSP H+S  FW +NA RLNE    LL+ L H+++ + D   LAVA
Sbjct: 330 TFDMYKSELDTGILHWSPSHRSEDFWHQNAKRLNEDNYALLKKLFHIVQYNEDNTSLAVA 389

Query: 183 CYDIGEYVRHYPRGKHIIEQLGGK 254
           C+D+G Y+R YP G+ +I + G K
Sbjct: 390 CHDLGAYIRSYPEGRSLIIKYGAK 413



 Score = 36.3 bits (80), Expect = 0.005
 Identities = 16/26 (61%), Positives = 20/26 (76%)
 Frame = +2

Query: 254 KRVMYLLSHDDPNVRYEALLAVQKLM 331
           +R+M L+SH DP VR+EAL  VQ LM
Sbjct: 414 QRIMDLMSHPDPEVRFEALSTVQLLM 439


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1131

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = -3

Query: 540  SFMNHNRAYKNVYEFVTAFYQCNNSNKLYIFLIYNVMS*KIYALAPTTVPACLSICS 370
            +F+  N    N      + Y  N   K YI+L+   ++     +APT V  C S C+
Sbjct: 1053 NFLLRNDIVPNTNNSAWSEYIRNLYPKAYIYLLQYTIAVCKPTIAPTNVACCCSKCN 1109


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 145 SKCTRVRSSSWPRSFKRAA 89
           S   R+R S WPRSF R++
Sbjct: 646 SSIGRLRRSEWPRSFNRSS 664


>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +3

Query: 117 ELLRTLVHLLEKSRDPVVLAVAC 185
           E++  ++ L+EKS++P +L  AC
Sbjct: 203 EVVSEILELIEKSKNPSILVDAC 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,214,935
Number of Sequences: 5004
Number of extensions: 65966
Number of successful extensions: 188
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)